View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_high_33 (Length: 207)

Name: NF0900_high_33
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_high_33
NF0900_high_33
[»] chr7 (24 HSPs)
chr7 (8-119)||(18873309-18873420)
chr7 (8-114)||(15168124-15168230)
chr7 (8-118)||(14422932-14423043)
chr7 (8-123)||(12709835-12709949)
chr7 (8-123)||(13122906-13123020)
chr7 (8-123)||(13743658-13743772)
chr7 (8-114)||(16009525-16009631)
chr7 (8-110)||(10895795-10895898)
chr7 (8-123)||(12590635-12590749)
chr7 (8-123)||(13007381-13007495)
chr7 (8-112)||(16677242-16677348)
chr7 (8-112)||(17651478-17651584)
chr7 (59-123)||(21230951-21231015)
chr7 (59-114)||(11382871-11382926)
chr7 (59-114)||(11389348-11389403)
chr7 (59-115)||(20311051-20311107)
chr7 (51-114)||(13679485-13679548)
chr7 (60-115)||(2971254-2971309)
chr7 (60-115)||(20906461-20906516)
chr7 (60-114)||(11311059-11311113)
chr7 (79-120)||(831628-831669)
chr7 (79-120)||(1196808-1196849)
chr7 (79-120)||(34958578-34958619)
chr7 (58-114)||(46625961-46626017)
[»] chr5 (12 HSPs)
chr5 (8-119)||(22751090-22751201)
chr5 (8-123)||(38144528-38144643)
chr5 (8-114)||(28370055-28370161)
chr5 (8-114)||(19512334-19512441)
chr5 (8-119)||(23528580-23528690)
chr5 (50-114)||(18407944-18408008)
chr5 (59-123)||(22438738-22438803)
chr5 (50-114)||(23111200-23111264)
chr5 (60-115)||(19236900-19236955)
chr5 (62-115)||(22461158-22461211)
chr5 (62-115)||(22467782-22467835)
chr5 (59-123)||(42961566-42961630)
[»] chr3 (20 HSPs)
chr3 (8-114)||(14762758-14762864)
chr3 (8-112)||(20247791-20247895)
chr3 (8-112)||(38310802-38310906)
chr3 (8-114)||(9534276-9534382)
chr3 (8-112)||(24192904-24193009)
chr3 (8-115)||(23370505-23370613)
chr3 (37-123)||(41455089-41455174)
chr3 (8-115)||(24933828-24933934)
chr3 (16-123)||(16801459-16801566)
chr3 (53-114)||(18929239-18929300)
chr3 (50-114)||(17240513-17240577)
chr3 (60-115)||(13302240-13302295)
chr3 (60-115)||(13323787-13323842)
chr3 (60-115)||(12033444-12033499)
chr3 (60-115)||(13312896-13312951)
chr3 (60-115)||(17131732-17131787)
chr3 (60-115)||(51301589-51301644)
chr3 (41-115)||(10389443-10389517)
chr3 (41-115)||(10414532-10414606)
chr3 (41-115)||(10421202-10421276)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-123)||(111830-111946)
[»] scaffold0026 (2 HSPs)
scaffold0026 (8-123)||(11842-11957)
scaffold0026 (8-115)||(111634-111741)
[»] chr6 (23 HSPs)
chr6 (8-114)||(23057887-23057993)
chr6 (7-123)||(930087-930203)
chr6 (8-114)||(23839146-23839253)
chr6 (8-123)||(18800385-18800501)
chr6 (8-123)||(29614138-29614254)
chr6 (8-114)||(4477805-4477912)
chr6 (8-115)||(10986180-10986288)
chr6 (8-123)||(12168312-12168426)
chr6 (8-123)||(19287221-19287335)
chr6 (8-123)||(19785861-19785975)
chr6 (8-123)||(19878405-19878519)
chr6 (8-123)||(19884181-19884295)
chr6 (32-115)||(34639986-34640069)
chr6 (32-115)||(34646660-34646743)
chr6 (9-115)||(25469704-25469808)
chr6 (59-123)||(24512835-24512899)
chr6 (58-114)||(25397172-25397228)
chr6 (8-112)||(21565214-21565319)
chr6 (62-114)||(9187498-9187550)
chr6 (58-114)||(19471335-19471391)
chr6 (58-114)||(25348486-25348542)
chr6 (31-115)||(31252394-31252478)
chr6 (58-112)||(25598643-25598697)
[»] chr2 (15 HSPs)
chr2 (8-114)||(19661454-19661560)
chr2 (8-114)||(6483666-6483772)
chr2 (8-114)||(6487133-6487239)
chr2 (8-123)||(26583776-26583890)
chr2 (41-115)||(5706023-5706096)
chr2 (50-114)||(23265133-23265197)
chr2 (50-114)||(23280201-23280265)
chr2 (53-114)||(21908353-21908414)
chr2 (58-114)||(24661576-24661632)
chr2 (8-112)||(23089057-23089162)
chr2 (8-114)||(23101463-23101570)
chr2 (49-112)||(23878997-23879060)
chr2 (60-115)||(10577-10632)
chr2 (60-115)||(25180929-25180984)
chr2 (43-115)||(26885166-26885237)
[»] chr8 (14 HSPs)
chr8 (8-115)||(44477571-44477678)
chr8 (8-115)||(44492729-44492836)
chr8 (8-123)||(23866564-23866678)
chr8 (8-112)||(8727735-8727840)
chr8 (8-123)||(17054540-17054654)
chr8 (15-114)||(18614227-18614327)
chr8 (50-114)||(23482053-23482117)
chr8 (59-123)||(14056555-14056619)
chr8 (58-114)||(39364919-39364975)
chr8 (60-114)||(29643386-29643440)
chr8 (59-120)||(25111976-25112037)
chr8 (60-115)||(24320670-24320725)
chr8 (58-114)||(21931696-21931752)
chr8 (59-123)||(27940843-27940907)
[»] scaffold0924 (1 HSPs)
scaffold0924 (10-123)||(742-856)
[»] chr4 (12 HSPs)
chr4 (13-123)||(8045824-8045933)
chr4 (10-123)||(11848058-11848177)
chr4 (41-115)||(53483687-53483760)
chr4 (59-115)||(15408139-15408195)
chr4 (58-114)||(8834895-8834951)
chr4 (58-114)||(13888641-13888697)
chr4 (31-112)||(14486632-14486713)
chr4 (58-114)||(15245215-15245271)
chr4 (58-109)||(22724691-22724742)
chr4 (79-120)||(15747551-15747592)
chr4 (11-115)||(27906216-27906321)
chr4 (58-114)||(15308120-15308176)
[»] scaffold0247 (1 HSPs)
scaffold0247 (8-123)||(11289-11405)
[»] scaffold0154 (1 HSPs)
scaffold0154 (8-123)||(30805-30921)
[»] scaffold0058 (1 HSPs)
scaffold0058 (8-123)||(240-354)
[»] chr1 (12 HSPs)
chr1 (8-114)||(20437024-20437131)
chr1 (8-123)||(41111984-41112098)
chr1 (50-114)||(32651563-32651627)
chr1 (59-114)||(19663517-19663572)
chr1 (50-114)||(18712790-18712854)
chr1 (58-114)||(20805320-20805376)
chr1 (59-114)||(11158093-11158148)
chr1 (58-112)||(10811785-10811839)
chr1 (60-115)||(20851132-20851187)
chr1 (60-115)||(20857759-20857814)
chr1 (60-115)||(21706276-21706331)
chr1 (60-115)||(21710818-21710873)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-112)||(14398-14503)
[»] scaffold1773 (1 HSPs)
scaffold1773 (10-122)||(1129-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (10-122)||(50130-50241)
[»] scaffold0553 (1 HSPs)
scaffold0553 (8-115)||(10195-10303)
[»] scaffold0544 (1 HSPs)
scaffold0544 (8-115)||(1525-1633)
[»] scaffold0117 (2 HSPs)
scaffold0117 (8-123)||(1889-2005)
scaffold0117 (8-123)||(8566-8682)
[»] scaffold0090 (1 HSPs)
scaffold0090 (8-123)||(18117-18233)
[»] scaffold0456 (2 HSPs)
scaffold0456 (32-119)||(904-991)
scaffold0456 (32-119)||(8049-8136)
[»] scaffold0796 (2 HSPs)
scaffold0796 (8-120)||(1727-1838)
scaffold0796 (8-120)||(5750-5861)
[»] scaffold0129 (1 HSPs)
scaffold0129 (41-121)||(45268-45347)
[»] scaffold0222 (1 HSPs)
scaffold0222 (50-114)||(16811-16875)
[»] scaffold0107 (1 HSPs)
scaffold0107 (59-123)||(40523-40587)
[»] scaffold0004 (1 HSPs)
scaffold0004 (50-114)||(116887-116951)
[»] scaffold0124 (1 HSPs)
scaffold0124 (59-114)||(34276-34331)
[»] scaffold0310 (1 HSPs)
scaffold0310 (59-123)||(17643-17708)
[»] scaffold0461 (1 HSPs)
scaffold0461 (50-114)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (50-114)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (50-114)||(101928-101992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (59-115)||(135473-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (61-123)||(22584-22646)
[»] scaffold0476 (1 HSPs)
scaffold0476 (8-112)||(3295-3400)
[»] scaffold0077 (1 HSPs)
scaffold0077 (8-112)||(3624-3729)
[»] scaffold0815 (1 HSPs)
scaffold0815 (63-123)||(1453-1513)
[»] scaffold0609 (1 HSPs)
scaffold0609 (31-115)||(5857-5941)
[»] scaffold0138 (1 HSPs)
scaffold0138 (58-114)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (51-114)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (59-114)||(14997-15052)
[»] scaffold2054 (1 HSPs)
scaffold2054 (26-123)||(680-778)
[»] scaffold0096 (1 HSPs)
scaffold0096 (58-118)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (43-115)||(493028-493099)
[»] scaffold0790 (1 HSPs)
scaffold0790 (93-128)||(5487-5522)
[»] scaffold0348 (1 HSPs)
scaffold0348 (60-115)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (60-115)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (60-115)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (60-114)||(1913-1967)
[»] scaffold0453 (1 HSPs)
scaffold0453 (31-115)||(10550-10634)
[»] scaffold0335 (1 HSPs)
scaffold0335 (58-114)||(2628-2684)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 18873309 - 18873420
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18873309 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcaccct 18873408  T
Q  108 taccttagtttt 119  Q
    ||||||||||||    
T  18873409 taccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 15168124 - 15168230
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168124 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 15168223  T
Q  108 tacctta 114  Q
    |||||||    
T  15168224 tacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 14422932 - 14423043
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14422932 catcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 14423031  T
Q  107 ttaccttagttt 118  Q
    ||||||||||||    
T  14423032 ttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 12709949 - 12709835
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  12709949 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcaccct 12709851  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  12709850 taccttagttttgcag 12709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 13123020 - 13122906
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  13123020 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcaccct 13122922  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  13122921 taccttagttttgcag 13122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 13743658 - 13743772
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  13743658 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcaccct 13743756  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  13743757 taccttagttttgcag 13743772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 16009525 - 16009631
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16009525 catcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 16009624  T
Q  108 tacctta 114  Q
    |||||||    
T  16009625 tacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 10895898 - 10895795
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10895898 catcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcaccc 10895799  T
Q  107 ttac 110  Q
    ||||    
T  10895798 ttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 12590749 - 12590635
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  12590749 catcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 12590651  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  12590650 taccttagttttgcag 12590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 13007381 - 13007495
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  13007381 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 13007479  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  13007480 taccttagttttgcag 13007495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 16677242 - 16677348
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 105  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16677242 catcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacc 16677341  T
Q  106 cttacct 112  Q
    |||||||    
T  16677342 cttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 17651478 - 17651584
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 105  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  17651478 catcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacc 17651577  T
Q  106 cttacct 112  Q
    |||||||    
T  17651578 cttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 21231015 - 21230951
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcag 21230951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 20311107 - 20311051
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttag 20311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  51 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  79 ttatgattatcgagagatagtctcacccttaccttagttttg 120  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  79 ttatgattatcgagagatagtctcacccttaccttagttttg 120  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  79 ttatgattatcgagagatagtctcacccttaccttagttttg 120  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 22751090 - 22751201
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22751090 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcaccct 22751189  T
Q  108 taccttagtttt 119  Q
    ||||||||||||    
T  22751190 taccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 38144643 - 38144528
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38144643 catcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 38144544  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  38144543 taccttagttttgcag 38144528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 28370161 - 28370055
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28370161 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 28370062  T
Q  108 tacctta 114  Q
    |||||||    
T  28370061 tacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 19512334 - 19512441
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19512334 catcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 19512433  T
Q  107 ttacctta 114  Q
    ||||||||    
T  19512434 ttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 23528580 - 23528690
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  23528580 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 23528678  T
Q  108 taccttagtttt 119  Q
    ||||||||||||    
T  23528679 taccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 22438803 - 22438738
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcag 123  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcag 22438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  62 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  62 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 42961566 - 42961630
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||| ||| ||||| || || ||  | ||| ||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcag 42961630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14762864 - 14762758
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762864 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 14762765  T
Q  108 tacctta 114  Q
    |||||||    
T  14762764 tacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 20247895 - 20247791
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20247895 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 20247796  T
Q  108 tacct 112  Q
    |||||    
T  20247795 tacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 38310906 - 38310802
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38310906 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcaccct 38310807  T
Q  108 tacct 112  Q
    |||||    
T  38310806 tacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 9534276 - 9534382
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9534276 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 9534375  T
Q  108 tacctta 114  Q
    |||||||    
T  9534376 tacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 24192904 - 24193009
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24192904 catcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 24193003  T
Q  107 ttacct 112  Q
    ||||||    
T  24193004 ttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 23370613 - 23370505
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  23370613 catcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccaccc 23370514  T
Q  107 ttaccttag 115  Q
    |||||||||    
T  23370513 ttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 41455174 - 41455089
Alignment:
Q  37 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41455174 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 41455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 24933934 - 24933828
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||   |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  24933934 catcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 24933836  T
Q  108 taccttag 115  Q
    ||||||||    
T  24933835 taccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 16801566 - 16801459
Alignment:
Q  16 aaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||| ||||||| |||||| ||| ||| ||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  16801566 aaccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttacctta 16801468  T
Q  115 gttttgcag 123  Q
    |||||||||    
T  16801467 gttttgcag 16801459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  53 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 10389517 - 10389443
Alignment:
Q  41 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10389517 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 10414606 - 10414532
Alignment:
Q  41 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10414606 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 10421276 - 10421202
Alignment:
Q  41 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10421276 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 111830 - 111946
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  111830 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcaccc 111929  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  111930 ttaccttagttttgcag 111946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 11957 - 11842
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11957 catcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 11858  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  11857 taccttagttttgcag 11842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 111634 - 111741
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  111634 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 111733  T
Q  108 taccttag 115  Q
    ||||||||    
T  111734 taccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 23057887 - 23057993
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23057887 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcaccct 23057986  T
Q  108 tacctta 114  Q
    |||||||    
T  23057987 tacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 930203 - 930087
Alignment:
Q  7 acatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  930203 acatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagattatgattattgagagatagtctcaccc 930104  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  930103 ttaccttagttttgcag 930087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 23839146 - 23839253
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaa-actatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23839146 catcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 23839245  T
Q  107 ttacctta 114  Q
    ||||||||    
T  23839246 ttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 18800385 - 18800501
Alignment:
Q  8 catcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18800385 catcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 18800484  T
Q  107 ttaccttagttttgcag 123  Q
    |||| ||||||||||||    
T  18800485 ttacattagttttgcag 18800501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 29614254 - 29614138
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatctt-ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    |||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29614254 catcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 29614155  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  29614154 ttaccttagttttgcag 29614138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 4477805 - 4477912
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4477805 catcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 4477904  T
Q  107 ttacctta 114  Q
    ||||||||    
T  4477905 ttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 10986288 - 10986180
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  10986288 catcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcaccc 10986189  T
Q  107 ttaccttag 115  Q
    |||||||||    
T  10986188 ttaccttag 10986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 12168312 - 12168426
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  12168312 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 12168410  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  12168411 taccttagttttgcag 12168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 19287221 - 19287335
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  19287221 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 19287319  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  19287320 taccttagttttgcag 19287335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 19785975 - 19785861
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  ||| ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  19785975 catcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 19785877  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  19785876 taccttagttttgcag 19785861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 19878405 - 19878519
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  19878405 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 19878503  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  19878504 taccttagttttgcag 19878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 19884181 - 19884295
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  19884181 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 19884279  T
Q  108 taccttagttttgcag 123  Q
     |||||||||||||||    
T  19884280 aaccttagttttgcag 19884295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  32 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  32 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 25469808 - 25469704
Alignment:
Q  9 atcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 108  Q
    |||||||||||||||   |||  |||| ||||||||| || ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  25469808 atcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcaccctt 25469711  T
Q  109 accttag 115  Q
    |||||||    
T  25469710 accttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 24512899 - 24512835
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcag 24512835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 21565319 - 21565214
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctcacc 105  Q
    |||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||||    
T  21565319 catcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacc 21565221  T
Q  106 cttacct 112  Q
    |||||||    
T  21565220 cttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  62 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 31252394 - 31252478
Alignment:
Q  31 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 112  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 19661560 - 19661454
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19661560 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcaccct 19661461  T
Q  108 tacctta 114  Q
    |||||||    
T  19661460 tacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 6483666 - 6483772
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6483666 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 6483765  T
Q  108 tacctta 114  Q
    |||||||    
T  6483766 tacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 6487133 - 6487239
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6487133 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 6487232  T
Q  108 tacctta 114  Q
    |||||||    
T  6487233 tacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 26583776 - 26583890
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  26583776 catcatcaagccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 26583874  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  26583875 taccttagttttgcag 26583890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 5706096 - 5706023
Alignment:
Q  41 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  5706096 aaaactattcaattaggtcaattt-caggaattatagattatgattaatgagagatagtctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  53 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 23089162 - 23089057
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctcacc 105  Q
    |||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||||    
T  23089162 catcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacc 23089064  T
Q  106 cttacct 112  Q
    |||||||    
T  23089063 cttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 23101570 - 23101463
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctcacc 105  Q
    |||||||||||||||||||||||||| ||| || ||   ||  ||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||||    
T  23101570 catcatcaaaccctaaccctcaattttatcctc-aaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacc 23101472  T
Q  106 cttacctta 114  Q
    |||||||||    
T  23101471 cttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 23878997 - 23879060
Alignment:
Q  49 gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 112  Q
    |||||||||||||||||  ||||||||| || || ||||  |||||||||||||||||||||||    
T  23878997 gcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 26885166 - 26885237
Alignment:
Q  43 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||    
T  26885166 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 44477571 - 44477678
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44477571 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 44477670  T
Q  108 taccttag 115  Q
    ||||||||    
T  44477671 taccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 44492729 - 44492836
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44492729 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccct 44492828  T
Q  108 taccttag 115  Q
    ||||||||    
T  44492829 taccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 23866564 - 23866678
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  23866564 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcaccct 23866662  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  23866663 taccttagttttgcag 23866678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 8727840 - 8727735
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  8727840 catcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcaccc 8727741  T
Q  107 ttacct 112  Q
    ||||||    
T  8727740 ttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 17054540 - 17054654
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  17054540 catcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccct 17054638  T
Q  108 taccttagttttgcag 123  Q
    |||||| |||||||||    
T  17054639 taccttggttttgcag 17054654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 18614227 - 18614327
Alignment:
Q  15 aaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctt 113  Q
    |||||||||  |||||||| |||||| | ||| || ||||| | ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||    
T  18614227 aaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctt 18614326  T
Q  114 a 114  Q
    |    
T  18614327 a 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 14056619 - 14056555
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcag 14056555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 25111976 - 25112037
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 120  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttg 25112037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 27940907 - 27940843
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||| ||| ||||| || || ||  | ||| ||||||||||||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcag 27940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 856 - 742
Alignment:
Q  10 tcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 108  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  856 tcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctt 757  T
Q  109 accttagttttgcag 123  Q
    |||||||||||||||    
T  756 accttagttttgcag 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 8045933 - 8045824
Alignment:
Q  13 tcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8045933 tcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttacct 8045835  T
Q  113 tagttttgcag 123  Q
    |||||||||||    
T  8045834 tagttttgcag 8045824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 11848058 - 11848177
Alignment:
Q  10 tcatcaaaccctaaccctcaatttatcttc------caaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 103  Q
    ||||||||||||||||||||||| || ||       ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  11848058 tcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctca 11848157  T
Q  104 cccttaccttagttttgcag 123  Q
    ||||||||||||||||||||    
T  11848158 cccttaccttagttttgcag 11848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 53483687 - 53483760
Alignment:
Q  41 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  53483687 aaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 15408139 - 15408195
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 15408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 14486632 - 14486713
Alignment:
Q  31 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 112  Q
    ||||||||| | ||| || ||||| | | ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486632 tttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 109  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  79 ttatgattatcgagagatagtctcacccttaccttagttttg 120  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 27906216 - 27906321
Alignment:
Q  11 catcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 109  Q
    ||||| |||||||  |||||||| |||||| | |||||| | ||||  | ||||||||||||||||| |||||||| || || ||||| || ||||||||    
T  27906216 catcacaccctaattctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccaccctta 27906315  T
Q  110 ccttag 115  Q
     |||||    
T  27906316 tcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 11289 - 11405
Alignment:
Q  8 catcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11289 catcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 11388  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  11389 ttaccttagttttgcag 11405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 30805 - 30921
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30805 catcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 30904  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  30905 ttaccttagttttgcag 30921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 240 - 354
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  240 catcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcaccct 338  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  339 taccttagttttgcag 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 20437131 - 20437024
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20437131 catcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 20437032  T
Q  107 ttacctta 114  Q
    ||||||||    
T  20437031 ttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 41111984 - 41112098
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  41111984 catcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcaccct 41112082  T
Q  108 taccttagttttgcag 123  Q
    ||||||||||||||||    
T  41112083 taccttagttttgcag 41112098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 112  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 14503 - 14398
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14503 catcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 14404  T
Q  107 ttacct 112  Q
    ||||||    
T  14403 ttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 1129 - 1240
Alignment:
Q  10 tcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  1129 tcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccctta 1227  T
Q  110 ccttagttttgca 122  Q
    |||||||||||||    
T  1228 ccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 50130 - 50241
Alignment:
Q  10 tcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  50130 tcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccctta 50228  T
Q  110 ccttagttttgca 122  Q
    |||||||||||||    
T  50229 ccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 10303 - 10195
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  10303 catcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccaccc 10204  T
Q  107 ttaccttag 115  Q
    |||||||||    
T  10203 ttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 1633 - 1525
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  1633 catcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccaccc 1534  T
Q  107 ttaccttag 115  Q
    |||||||||    
T  1533 ttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 2005 - 1889
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  2005 catcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcaccc 1906  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  1905 ttaccttagttttgcag 1889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 8682 - 8566
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  8682 catcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcaccc 8583  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  8582 ttaccttagttttgcag 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 18117 - 18233
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccc 106  Q
    |||||| ||||| ||||||||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  18117 catcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcaccc 18216  T
Q  107 ttaccttagttttgcag 123  Q
    |||||||||||||||||    
T  18217 ttaccttagttttgcag 18233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 904 - 991
Alignment:
Q  32 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 119  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  32 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 119  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 1838 - 1727
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  1838 catcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccct 1740  T
Q  108 taccttagttttg 120  Q
    |||||||||||||    
T  1739 taccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 5861 - 5750
Alignment:
Q  8 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 107  Q
    |||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  5861 catcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccct 5763  T
Q  108 taccttagttttg 120  Q
    |||||||||||||    
T  5762 taccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 45347 - 45268
Alignment:
Q  41 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgc 121  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  45347 aaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 40587 - 40523
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcag 40523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 17643 - 17708
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcag 123  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcag 17708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  50 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 135473 - 135529
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 22646 - 22584
Alignment:
Q  61 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcag 22584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 3400 - 3295
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctcacc 105  Q
    |||||||||||||||||||||||||| |||  ||||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||||    
T  3400 catcatcaaaccctaaccctcaattttatcc-ccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacc 3302  T
Q  106 cttacct 112  Q
    |||||||    
T  3301 cttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 3729 - 3624
Alignment:
Q  8 catcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctcacc 105  Q
    |||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||||    
T  3729 catcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacc 3631  T
Q  106 cttacct 112  Q
    |||||||    
T  3630 cttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 1453 - 1513
Alignment:
Q  63 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcag 1513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 5941 - 5857
Alignment:
Q  31 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  51 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  59 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 680 - 778
Alignment:
Q  26 ctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 123  Q
    |||||||||| ||| | |||||| |  |||||| |||||| ||||||||||| |||| ||| || || ||||| || ||||||||||||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcag 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 118  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 493099 - 493028
Alignment:
Q  43 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttag 493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 5487 - 5522
Alignment:
Q  93 agatagtctcacccttaccttagttttgcagtataa 128  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5487 agatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  60 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 10634 - 10550
Alignment:
Q  31 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 115  Q
    ||||||||| | |||||| | ||||| | ||||||||||||||||| |||| ||| || || ||||| || ||| ||||||||||    
T  10634 tttatcttcaagaactattctattagattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttag 10550  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  58 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 114  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

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