View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_101 (Length: 211)

Name: NF0900_low_101
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_101
NF0900_low_101
[»] chr1 (22 HSPs)
chr1 (104-208)||(10979469-10979573)
chr1 (104-208)||(11007873-11007977)
chr1 (99-208)||(10974391-10974500)
chr1 (104-208)||(11011035-11011139)
chr1 (104-208)||(10914734-10914838)
chr1 (104-208)||(11033326-11033430)
chr1 (105-208)||(10903571-10903674)
chr1 (104-206)||(11028468-11028570)
chr1 (104-184)||(11004883-11004963)
chr1 (99-189)||(9233915-9234005)
chr1 (119-189)||(9453700-9453770)
chr1 (119-184)||(8964681-8964746)
chr1 (104-177)||(8999839-8999912)
chr1 (119-189)||(9399796-9399866)
chr1 (119-186)||(9464285-9464352)
chr1 (119-186)||(9488717-9488784)
chr1 (99-189)||(9384389-9384479)
chr1 (119-189)||(9432713-9432783)
chr1 (119-184)||(8873944-8874009)
chr1 (119-183)||(9318166-9318230)
chr1 (119-191)||(9320064-9320136)
chr1 (119-191)||(9350381-9350453)
[»] chr5 (1 HSPs)
chr5 (149-189)||(40225245-40225285)
[»] chr4 (1 HSPs)
chr4 (114-159)||(27692614-27692659)
[»] chr2 (1 HSPs)
chr2 (149-189)||(7945893-7945933)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 10979573 - 10979469
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10979573 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta 10979474  T
Q  204 cagat 208  Q
    |||||    
T  10979473 cagat 10979469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 11007977 - 11007873
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 203  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11007977 atgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta 11007878  T
Q  204 cagat 208  Q
    |||||    
T  11007877 cagat 11007873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 10974500 - 10974391
Alignment:
Q  99 gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctg 198  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  10974500 gtgatatgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattttggacttgctagactttg 10974401  T
Q  199 tcctacagat 208  Q
    ||||||||||    
T  10974400 tcctacagat 10974391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 11011139 - 11011035
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 203  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11011139 atgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggactagctagactttgtccta 11011040  T
Q  204 cagat 208  Q
    |||||    
T  11011039 cagat 11011035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 10914838 - 10914734
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | |||||    
T  10914838 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagccaggctttctccta 10914739  T
Q  204 cagat 208  Q
    |||||    
T  10914738 cagat 10914734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 11033430 - 11033326
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 203  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  11033430 atgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagctagactttgtccta 11033331  T
Q  204 cagat 208  Q
    |||||    
T  11033330 cagat 11033326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 10903674 - 10903571
Alignment:
Q  105 tgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctac 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  10903674 tgaaaattctacactttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttggacttgccagactttctcctac 10903575  T
Q  205 agat 208  Q
    ||||    
T  10903574 agat 10903571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 11028468 - 11028570
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||    
T  11028468 atgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctagactttgtccta 11028567  T
Q  204 cag 206  Q
    |||    
T  11028568 cag 11028570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 11004883 - 11004963
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11004883 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 11004963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 9233915 - 9234005
Alignment:
Q  99 gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||| ||| |||||||||| |||||||| ||||||||||| || ||||| || ||| |||||  |||||| ||||| ||||||||||||||    
T  9233915 gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgc 9234005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 9453700 - 9453770
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| |||||||| |||||    
T  9453700 tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgc 9453770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 8964746 - 8964681
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 184  Q
    |||||||| |||||||| ||||||||||||||||| |||||||  |||||||| ||||| ||||||    
T  8964746 tttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttgga 8964681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 8999912 - 8999839
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctga 177  Q
    ||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| ||||  |||||||| |||||    
T  8999912 atgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctga 8999839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 9399866 - 9399796
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| || ||||| |||||    
T  9399866 tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgc 9399796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9464352 - 9464285
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 186  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9464352 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgact 9464285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9488784 - 9488717
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 186  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9488784 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagact 9488717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 9384479 - 9384389
Alignment:
Q  99 gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||| ||| |||||||||| |||||||| ||||||||||| || ||||| || ||| | ||   |||||| ||||| ||||||||||||||    
T  9384479 gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgc 9384389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 9432713 - 9432783
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| |||||||| ||||||||||| || ||||||||||  || |||||||| || ||||| |||||    
T  9432713 tttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgc 9432783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 8873944 - 8874009
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 184  Q
    |||||||| |||||||| ||||||||||||||||| || || | ||| ||||| ||||| ||||||    
T  8873944 tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttgga 8874009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 9318166 - 9318230
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgg 183  Q
    |||||||| ||||| |||||||||||||||||||| || || | ||| |||||||| || |||||    
T  9318166 tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttgg 9318230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 9320136 - 9320064
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgcta 191  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||    
T  9320136 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgcta 9320064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 9350453 - 9350381
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgcta 191  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||    
T  9350453 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgcta 9350381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 40225285 - 40225245
Alignment:
Q  149 gatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40225285 gatgaaaatttcaatccaaaactctctgattttggacttgc 40225245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 27692659 - 27692614
Alignment:
Q  114 tacactttgatataaagcctcataacatccttcttgatgaaaattt 159  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||    
T  27692659 tacactttgatataaaacctcataacattcttcttgacgagaattt 27692614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 7945893 - 7945933
Alignment:
Q  149 gatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  7945893 gatgaaaatttcaatccaaagctttctgattttggtcttgc 7945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 326 times since January 2019
Visitors: 6702