View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_105 (Length: 209)
Name: NF0900_low_105
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_105 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37704474 - 37704603
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
100 |
Q |
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| T |
37704474 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
37704573 |
T |
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| Q |
101 |
gtaaccatcatagaaaagtttggtgttcat |
130 |
Q |
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| T |
37704574 |
gtaaccatcatagaaaagtttggtgttcat |
37704603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 37699008 - 37699124
Alignment:
| Q |
14 |
attgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatag |
113 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37699008 |
attgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatag |
37699107 |
T |
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| Q |
114 |
aaaagtttggtgttcat |
130 |
Q |
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||||||||||||||||| |
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| T |
37699108 |
aaaagtttggtgttcat |
37699124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37437540 - 37437668
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
100 |
Q |
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||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |||||||||||||||||||| |
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| T |
37437540 |
agattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaattggcaacaatattaattca |
37437638 |
T |
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| Q |
101 |
gtaaccatcatagaaaagtttggtgttcat |
130 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
37437639 |
ataacaatcatagaaaagtttggtgttcat |
37437668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37698656 - 37698697
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgtt |
42 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
37698656 |
agattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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