View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_11 (Length: 482)
Name: NF0900_low_11
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_11 |
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| [»] scaffold0465 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 20135727 - 20135491
Alignment:
| Q |
1 |
tcatcaaaagtatttctcaaacgcacaagattggcccataatctttgctttgccgaaagatcacatttggaataaatgttcaccacaaaacatctttgtt |
100 |
Q |
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||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20135727 |
tcatcaacaatatttctcaaacgcacaagattgacccataatctttgctttgccgaaagatcacatttgaaataaatgttcaccacaaaacatctttgtt |
20135628 |
T |
|
| Q |
101 |
tcttacatcctcattctaaacaaactttcacaaagccttcacccacaaaagagaaaaggtggtttgaaacggattttctccaaatagatataatcccgcc |
200 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
20135627 |
tcttacatccccattctaaacaaactcccacaaagccttcacccacaaaagagaaaaggatgtttgaaacggattttctccaaatagatataatctcgca |
20135528 |
T |
|
| Q |
201 |
actattaccgattgatggattaaaggcccaatcgcaa |
237 |
Q |
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| T |
20135527 |
actattaccgattgccggattaaaggcccaatcgcaa |
20135491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 20135133 - 20134967
Alignment:
| Q |
239 |
tatccggaatcaaagaactggactccgccaaaatcagatgcaaccccgaggccaacctccccgatgtaccatgatcaacagcaaacggaggtgcaacact |
338 |
Q |
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||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
20135133 |
tatccagaatcaaagaattggactcctccaaaatcagatgcaaccccgaggccgacctcccctgtgtaccatgatcaacaacaaacggaggtgctgcact |
20135034 |
T |
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| Q |
339 |
tccctccgcgtcctcatccgacaagaagcctcccccattaacatgcgcttctacatcaagcttcccc |
405 |
Q |
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| T |
20135033 |
tccctcctcctcctcatccaacaagaagcctcccccattaacatgcgcttctacatcaaccttcccc |
20134967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 28519817 - 28519999
Alignment:
| Q |
24 |
cacaagattggcccataatctttgctttgccgaaagatcacatttggaataaatgttcaccacaaaacatctttgtttcttacatcctcattctaaacaa |
123 |
Q |
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||||||||| ||||| |||||||| || ||| | ||||||||| || ||||| ||||||||||||||||| ||| || | ||| |||||||||||| |
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| T |
28519817 |
cacaagatttgcccacaatctttgtttcgccactaaatcacatttcgagtaaatattcaccacaaaacatctcactttgttccttccccattctaaacaa |
28519916 |
T |
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| Q |
124 |
actttcacaaagccttcacccacaaaagagaaaaggtggtttgaaacggattttctccaaatagatataatcccgccactatt |
206 |
Q |
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||| ||| |||||||| ||| |||| |||||||| |||| ||| |||||||| ||||||||| || ||||| |||||||| |
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| T |
28519917 |
actcccacgaagccttctcccgcaaaggagaaaagaaggttggaattggattttcgccaaatagaaatgatcccaccactatt |
28519999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0465 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 6353 - 6527
Alignment:
| Q |
35 |
cccataatctttgctttgccgaaagatcacatttggaataaatgttcaccacaaaacatctttgtttcttacatcctcattctaaacaaactttcacaaa |
134 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||| ||| ||||||||||||||| |||||| |
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| T |
6353 |
cccataatctttgatttgccgaaaaatcacatttggaataaatgttcaccacaaaacatctctctttattacttccccattctaaacaaactcccacaaa |
6452 |
T |
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| Q |
135 |
gccttcacccacaaaagagaaaaggtggtttgaaacggattttctccaaatagatataatcccgccactattacc |
209 |
Q |
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||||||||||||||||||||||| | || |||| |||||||||||||||||| ||||| || ||||||||||| |
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| T |
6453 |
accttcacccacaaaagagaaaagaagattggaaatggattttctccaaatagaaataataccaccactattacc |
6527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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