View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_12 (Length: 451)

Name: NF0900_low_12
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_12
NF0900_low_12
[»] chr7 (14 HSPs)
chr7 (104-432)||(27133983-27134310)
chr7 (242-432)||(27147035-27147221)
chr7 (239-372)||(27157957-27158088)
chr7 (240-359)||(27165508-27165627)
chr7 (240-359)||(27220198-27220317)
chr7 (253-359)||(27304360-27304466)
chr7 (241-359)||(27301500-27301621)
chr7 (240-345)||(27281674-27281779)
chr7 (240-353)||(27296134-27296247)
chr7 (240-326)||(27243104-27243190)
chr7 (240-345)||(27271563-27271668)
chr7 (240-345)||(27249054-27249159)
chr7 (240-319)||(27312620-27312699)
chr7 (265-322)||(27246136-27246193)
[»] chr1 (2 HSPs)
chr1 (253-322)||(14884287-14884356)
chr1 (253-326)||(14889938-14890011)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 104 - 432
Target Start/End: Complemental strand, 27134310 - 27133983
Alignment:
Q  104 tcaggtgtagttgtggctttgtcttttatatccttaagcccaccgcaacatcctgcagggggagggtcatcaccgggtgttgtagcatacccagcacatg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27134310 tcaggtgtagttgtggctttgtcttttatatccttaagcccaccgcaacatcctgcagggggagggtcatcgccgggtgttgtagcatacccagcacatg 27134211  T
Q  204 gatataaagtatctgtcacttcattgcatgtcataccagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaag 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  27134210 gatataaagtatctgtcacttcattgcatgtcataccagcatttgataatggaatgaccaaaaccaagcatagcatagacatacaagtaatcttaacaag 27134111  T
Q  304 cattgagctagccatgatttggagattttgatagaggaaatgctattcaagtgtgtgtggagatgaatggaatgatcaagtatttatagagttagaagat 403  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27134110 cattgagctagccatggtttggaga-tttgatagaggaaatgctattcaagtgtgtgtggagatgaatggaatgatcaagtatttatagagttagaagat 27134012  T
Q  404 accactaattcaactttggtcacaatgtt 432  Q
    |||||||||||||||||||||||||||||    
T  27134011 accactaattcaactttggtcacaatgtt 27133983  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 242 - 432
Target Start/End: Complemental strand, 27147221 - 27147035
Alignment:
Q  242 gcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagagga 341  Q
    ||||||| ||||||||||||||||| |||||| | || |||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27147221 gcatttgctaatggaatggccaaaagcaagcacatcacagacaaacaagtaaccttaataagcattgagctagccatgatttggaaattttgatagagga 27147122  T
Q  342 aatgctattcaagtgtgtgtggagatgaatggaatgatcaagtatttatagagttagaagataccactaattcaactttggtcacaatgtt 432  Q
    ||||| ||||||||  |||| |||||||||| |||  | ||||||||||||||| |||||||| ||| |||||||||||| || |||||||    
T  27147121 aatgcaattcaagt--gtgtagagatgaatgcaat--ttaagtatttatagagtgagaagatatcacgaattcaactttgctcccaatgtt 27147035  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 239 - 372
Target Start/End: Complemental strand, 27158088 - 27157957
Alignment:
Q  239 ccagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgataga 338  Q
    |||||||||| |||||||||||||||||||||||| | || |||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  27158088 ccagcatttgctaatggaatggccaaaaccaagcacatcacagacaaacaagtaaccttaataagcattgagctagccatgatttggaaattttgataga 27157989  T
Q  339 ggaaatgctattcaagtgtgtgtggagatgaatg 372  Q
    |||||||| |||||||||  ||||||||||||||    
T  27157988 ggaaatgcaattcaagtg--tgtggagatgaatg 27157957  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 27165627 - 27165508
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagag 339  Q
    ||||||| | |||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  27165627 cagcattggctaatggaatggccaaaaccaagcatatcacagacaaacaagtgatcttaacaagcattgaggtagccatgatttggaaattttgatagag 27165528  T
Q  340 gaaatgctattcaagtgtgt 359  Q
    ||||||| |||||| |||||    
T  27165527 gaaatgcaattcaattgtgt 27165508  T

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Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 27220317 - 27220198
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagag 339  Q
    ||||||| | |||||||||| ||||||||||||||| ||||| ||| ||||||| ||| | ||||||||| |||||||||||||||| ||||||||||||    
T  27220317 cagcattggctaatggaatgcccaaaaccaagcatatcatagccaaacaagtaaccttcaaaagcattgaactagccatgatttggaaattttgatagag 27220218  T
Q  340 gaaatgctattcaagtgtgt 359  Q
    ||||||||||||||||||||    
T  27220217 gaaatgctattcaagtgtgt 27220198  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 27304466 - 27304360
Alignment:
Q  253 tggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagaggaaatgctattca 352  Q
    ||||||| ||||||||||||||| ||||| |||||||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||||||| |||||    
T  27304466 tggaatgcccaaaaccaagcatatcatagccaagcaagtaactttgacaagcattgaactagccatgatttggaaattttggaagaggaaatgcaattca 27304367  T
Q  353 agtgtgt 359  Q
    |||||||    
T  27304366 agtgtgt 27304360  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 27301621 - 27301500
Alignment:
Q  241 agcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaa---caagcattgagctagccatgatttggagattttgatag 337  Q
    |||||| | ||||||||||  |||||||||||||| ||||| |||||||||||  || |   |||||||||| |||||||||||||||| ||||||  ||    
T  27301621 agcattggctaatggaatgcacaaaaccaagcatatcatagccaagcaagtaactttgatcacaagcattgaactagccatgatttggaaattttggaag 27301522  T
Q  338 aggaaatgctattcaagtgtgt 359  Q
    ||||||||||||||||||||||    
T  27301521 aggaaatgctattcaagtgtgt 27301500  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 27281779 - 27281674
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagag 339  Q
    ||||||| | || ||||||| ||||||||||||||| ||||| ||| ||||||| ||| ||||||||||| |||||||||||||||| ||||||  ||||    
T  27281779 cagcattggctagtggaatgcccaaaaccaagcatatcatagccaaacaagtaaccttgacaagcattgaactagccatgatttggaaattttggaagag 27281680  T
Q  340 gaaatg 345  Q
    ||||||    
T  27281679 gaaatg 27281674  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 27296247 - 27296134
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagag 339  Q
    ||||||| | || ||||||| ||||||||||||||| | ||| ||| ||||||| ||| ||||||||||| |||||||||||||||| |||||   ||||    
T  27296247 cagcattggctagtggaatgcccaaaaccaagcatatcgtagccaaacaagtaaccttgacaagcattgaactagccatgatttggaaatttttgaagag 27296148  T
Q  340 gaaatgctattcaa 353  Q
    ||||||| ||||||    
T  27296147 gaaatgcaattcaa 27296134  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 27243190 - 27243104
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttgga 326  Q
    ||||||| | || ||||||| ||||||||||||||| ||||| ||| ||||||| ||| ||||||||||| ||||||||||||||||    
T  27243190 cagcattggctagtggaatgcccaaaaccaagcatatcatagccaaacaagtaaccttgacaagcattgaactagccatgatttgga 27243104  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 27271668 - 27271563
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagag 339  Q
    ||||||| | || |||||||  |||||||||||||| ||||| ||| ||||||| ||| ||||| ||||| |||||||||||||||| ||||||  ||||    
T  27271668 cagcattggctagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttgacaaggattgaactagccatgatttggaaattttggaagag 27271569  T
Q  340 gaaatg 345  Q
    ||||||    
T  27271568 gaaatg 27271563  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 27249159 - 27249054
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttggagattttgatagag 339  Q
    ||||||| | || ||||||| ||||||| ||||||| ||||| ||| ||||||| ||| |||| |||||| |||||||||||||||| |||||   ||||    
T  27249159 cagcattagctagtggaatgcccaaaactaagcatatcatagccaaacaagtaaccttgacaaacattgaactagccatgatttggaaattttcgaagag 27249060  T
Q  340 gaaatg 345  Q
    ||||||    
T  27249059 gaaatg 27249054  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 27312699 - 27312620
Alignment:
Q  240 cagcatttgataatggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatg 319  Q
    ||||||| | ||| ||| || ||||||||||||||| ||||| |||| |||||||||| |||| ||||||||||||||||    
T  27312699 cagcattggctaagggagtgcccaaaaccaagcatatcatagccaagaaagtaatcttgacaaacattgagctagccatg 27312620  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 27246193 - 27246136
Alignment:
Q  265 aaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatt 322  Q
    ||||||||||| || || ||||||||||| ||| |||| ||||||| |||||||||||    
T  27246193 aaccaagcatatcacagtcaagcaagtaaccttgacaaacattgaggtagccatgatt 27246136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 14884287 - 14884356
Alignment:
Q  253 tggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatt 322  Q
    ||||||| ||||||||||||||| ||||| ||| ||||||| |||   ||||||||| ||||||||||||    
T  14884287 tggaatgcccaaaaccaagcataacatagccaaacaagtaaccttggtaagcattgaactagccatgatt 14884356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 14889938 - 14890011
Alignment:
Q  253 tggaatggccaaaaccaagcatagcatagacaagcaagtaatcttaacaagcattgagctagccatgatttgga 326  Q
    |||||||  |||||||||||||| ||||| ||| ||||||| |||   ||||||||| ||||||||||||||||    
T  14889938 tggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttggtaagcattgaactagccatgatttgga 14890011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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