View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_13 (Length: 434)

Name: NF0900_low_13
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_13
NF0900_low_13
[»] scaffold1809 (1 HSPs)
scaffold1809 (85-414)||(970-1299)
[»] chr4 (14 HSPs)
chr4 (232-407)||(7099129-7099303)
chr4 (186-312)||(23872748-23872874)
chr4 (185-253)||(10562594-10562662)
chr4 (185-253)||(34976743-34976811)
chr4 (208-319)||(38296441-38296552)
chr4 (208-247)||(43516041-43516080)
chr4 (199-253)||(42779052-42779106)
chr4 (186-256)||(55299420-55299490)
chr4 (208-253)||(20396384-20396429)
chr4 (185-286)||(23641861-23641962)
chr4 (185-286)||(23647519-23647620)
chr4 (216-256)||(16698744-16698784)
chr4 (199-247)||(19115244-19115292)
chr4 (199-354)||(29553085-29553241)
[»] scaffold0024 (1 HSPs)
scaffold0024 (360-414)||(86647-86701)
[»] chr8 (8 HSPs)
chr8 (205-326)||(26774537-26774659)
chr8 (199-312)||(14345204-14345317)
chr8 (208-326)||(7453080-7453199)
chr8 (208-326)||(12332576-12332695)
chr8 (199-253)||(36157956-36158010)
chr8 (208-253)||(36493183-36493228)
chr8 (185-253)||(7925188-7925256)
chr8 (208-288)||(17700247-17700327)
[»] chr6 (9 HSPs)
chr6 (188-358)||(12673392-12673561)
chr6 (186-256)||(26206132-26206202)
chr6 (185-253)||(649343-649411)
chr6 (208-326)||(14843430-14843549)
chr6 (208-327)||(17577010-17577129)
chr6 (186-256)||(15674631-15674701)
chr6 (208-256)||(17605627-17605675)
chr6 (216-252)||(18589140-18589176)
chr6 (208-256)||(21629415-21629463)
[»] chr5 (10 HSPs)
chr5 (208-326)||(26261611-26261729)
chr5 (208-253)||(6050042-6050087)
chr5 (185-309)||(20207990-20208115)
chr5 (208-288)||(8299475-8299555)
chr5 (208-288)||(10780968-10781048)
chr5 (209-256)||(6885712-6885759)
chr5 (208-253)||(21084683-21084728)
chr5 (217-310)||(40035957-40036050)
chr5 (208-288)||(25856732-25856812)
chr5 (185-253)||(42514522-42514590)
[»] chr2 (8 HSPs)
chr2 (185-270)||(44028483-44028568)
chr2 (208-326)||(26146943-26147062)
chr2 (186-256)||(13551381-13551451)
chr2 (208-282)||(25380687-25380761)
chr2 (208-310)||(34357553-34357655)
chr2 (208-253)||(43311061-43311106)
chr2 (208-268)||(13416473-13416533)
chr2 (205-253)||(43722316-43722364)
[»] chr3 (14 HSPs)
chr3 (186-309)||(43120945-43121069)
chr3 (208-354)||(34830093-34830239)
chr3 (205-326)||(7164218-7164338)
chr3 (208-336)||(40513017-40513146)
chr3 (185-253)||(46907940-46908008)
chr3 (185-309)||(23819309-23819435)
chr3 (185-287)||(2365046-2365148)
chr3 (199-253)||(24925969-24926023)
chr3 (187-309)||(47538013-47538135)
chr3 (210-256)||(52907337-52907383)
chr3 (208-253)||(48569316-48569361)
chr3 (208-253)||(52250418-52250463)
chr3 (199-312)||(6175761-6175876)
chr3 (208-268)||(8130760-8130820)
[»] chr1 (9 HSPs)
chr1 (185-253)||(17708860-17708928)
chr1 (188-309)||(26721378-26721500)
chr1 (208-326)||(3544394-3544513)
chr1 (186-256)||(5497885-5497955)
chr1 (186-256)||(32352583-32352653)
chr1 (185-286)||(6051372-6051473)
chr1 (273-318)||(21408977-21409022)
chr1 (208-253)||(45271043-45271088)
chr1 (294-326)||(3074473-3074505)
[»] scaffold0179 (2 HSPs)
scaffold0179 (185-247)||(8340-8402)
scaffold0179 (199-247)||(13274-13322)
[»] chr7 (10 HSPs)
chr7 (263-414)||(29557850-29557998)
chr7 (199-254)||(4078078-4078133)
chr7 (208-247)||(27218415-27218454)
chr7 (186-253)||(33820830-33820897)
chr7 (208-282)||(6335685-6335759)
chr7 (283-337)||(6335773-6335827)
chr7 (187-245)||(22818989-22819047)
chr7 (185-286)||(4937398-4937499)
chr7 (208-308)||(29916966-29917067)
chr7 (208-253)||(34232503-34232548)
[»] scaffold0016 (1 HSPs)
scaffold0016 (208-319)||(28509-28621)
[»] scaffold0007 (1 HSPs)
scaffold0007 (199-253)||(182917-182971)
[»] scaffold0034 (1 HSPs)
scaffold0034 (185-286)||(105113-105214)


Alignment Details
Target: scaffold1809 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 85 - 414
Target Start/End: Original strand, 970 - 1299
Alignment:
Q  85 acatcatcatttatcgtttacatcatcatggtgttgttgactgtgataacaagaatttagaaaattactcaattcgnnnnnnncttttgatgtcccgacc 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||| ||||    
T  970 acatcatcatttatcgtttacatcatcttggtgttgttgactgtgataacaagaatttagaaaattacttaattcgtttttttcttttgatgtccggacc 1069  T
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
     |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  1070 atctgtcctagccgctctggctatctatgcactttccttcttcaaggctccatcaggtataatctcttctatataatatcttttgagtaaaaatttttgg 1169  T
Q  285 ggggaagttaggatcataggaaaatttcatgggtcggttggaggtttgtttgtatgcgaagggagtatggtggtctggaggttaggcaattaagatagtt 384  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1170 ggggaagttaggatcgtaggaaaatttcatgggtcggttggaggtttgtttgtatgcgaaaggagtatggtggtctggaggttaggcaattaagagagtt 1269  T
Q  385 taacaaggcattgttaggaaagtgatgatg 414  Q
    |||| |||||||||||||||||||||||||    
T  1270 taacgaggcattgttaggaaagtgatgatg 1299  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 407
Target Start/End: Complemental strand, 7099303 - 7099129
Alignment:
Q  232 ctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaaatttcatgggtcggttggaggttt 331  Q
    |||||||| ||||||| ||||| ||| |||||||||||| |||| |||||| || || ||| |||||||||| ||| |||| ||||| || |||||| |     
T  7099303 ctccatcaagtataatctcttccatagaatctcttttgattaaatttttttaggagggagtgaggatcatagaaaagtttcttgggtaggctggagg-tc 7099205  T
Q  332 gtttgtatgcgaagggagtatggtggtctggaggttaggcaattaagatagtttaacaaggcattgttaggaaagt 407  Q
    |||||||||| || ||||||||| ||| |||  |||||||| || ||  |||||||  |||| ||||| |||||||    
T  7099204 gtttgtatgctaaaggagtatggaggtttgggtgttaggcagttgagggagtttaatgaggcgttgttgggaaagt 7099129  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 23872748 - 23872874
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggg 285  Q
    |||||| || || ||||| || |||||||||||||||||||||  |||||| |||||||||| || |||||  | ||| | || | |||  |||||||||    
T  23872748 tctgtcttgacctctctgcctgtctatgcactttccttcttcaaagctccagcaggtataatctcctctattgattctttgtttattaattttttttggg 23872847  T
Q  286 gggaagttaggatcataggaaaatttc 312  Q
    ||| ||| ||||| |||||||||||||    
T  23872848 ggggagtgaggataataggaaaatttc 23872874  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 10562594 - 10562662
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||| ||| || ||||| || ||||||| |||||||||||||  ||||||||||||||||| |||||    
T  10562594 gtctgttctgacctctctgtctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttc 10562662  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 34976811 - 34976743
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||||||| || ||||| || | ||||| |||||||||||||  ||||||||||||||||| |||||    
T  34976811 gtctgtcctgacctctctgcctgtttatgcgctttccttcttcaaagctccatcaggtataatctcttc 34976743  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 38296552 - 38296441
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaa 307  Q
    ||||||| ||||||||||||| |||||| ||||||||||| | ||| ||  ||||| ||||   |||| ||||||||||||  || ||||||| |  |||    
T  38296552 tctatgctctttccttcttcaaggctccgtcaggtataattttttccattgaatctattttttctaaatttttttggggggttgtaaggatcacaaaaaa 38296453  T
Q  308 atttcatgggtc 319  Q
    ||||| ||||||    
T  38296452 atttcttgggtc 38296441  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 43516041 - 43516080
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataat 247  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  43516041 tctatgctctttccttcttcaaggctccatcaggtataat 43516080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 42779106 - 42779052
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||| || ||||||| |||||||||||||  ||||||||||||||||| |||||    
T  42779106 ctctgtctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttc 42779052  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 55299490 - 55299420
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    |||||| || || ||||| || |||||||||||||||||||||  |||||| |||||||||| || |||||    
T  55299490 tctgtcttgacctctctgcctgtctatgcactttccttcttcaaagctccaacaggtataatctcctctat 55299420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 20396429 - 20396384
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| |||||||||||||  ||||||||||||||||| |||||    
T  20396429 tctatgcgctttccttcttcaaagctccatcaggtataatctcttc 20396384  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 23641861 - 23641962
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| ||||| ||  ||||| | || | |||| ||||||||    
T  23641861 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttgg 23641960  T
Q  285 gg 286  Q
    ||    
T  23641961 gg 23641962  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 23647519 - 23647620
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| ||||| ||  ||||| | || | |||| ||||||||    
T  23647519 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttgg 23647618  T
Q  285 gg 286  Q
    ||    
T  23647619 gg 23647620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 16698744 - 16698784
Alignment:
Q  216 ctttccttcttcatggctccatcaggtataatatcttctat 256  Q
    |||||||||||||||||||| ||| ||||||| ||||||||    
T  16698744 ctttccttcttcatggctccctcaagtataatctcttctat 16698784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 19115292 - 19115244
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataat 247  Q
    ||||| || |||||||||||||||||||||  ||||| |||||||||||    
T  19115292 ctctgtctgtctatgcactttccttcttcaaagctccgtcaggtataat 19115244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 354
Target Start/End: Original strand, 29553085 - 29553241
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg-ggaagttagga 297  Q
    ||||| || ||||||| |||||||||||||  ||||| ||||||||||| ||||| ||  ||||| | || | |||| |||||||||| ||  || ||||    
T  29553085 ctctgcctgtctatgctctttccttcttcaaagctccgtcaggtataatctcttccattgaatctttatttaataaatttttttggggtgggggtgagga 29553184  T
Q  298 tcataggaaaatttcatgggtcggttggaggtttgtttgtatgcgaagggagtatgg 354  Q
     || |||||||| || ||| | |||||||| | ||||||| | | || |||||||||    
T  29553185 acacaggaaaatctcttggataggttggagttatgtttgtctccaaaaggagtatgg 29553241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 86647 - 86701
Alignment:
Q  360 tggaggttaggcaattaagatagtttaacaaggcattgttaggaaagtgatgatg 414  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  86647 tggaggttaggcaattaagagagtttaacgaggcattgttaggaaagtgatgatg 86701  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 26774537 - 26774659
Alignment:
Q  205 ctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg-ggaagttaggatcatag 303  Q
    |||||||||| || ||||||||||  ||||| ||| ||||||| ||||||||  ||| |||||| | |||| |||||||||| |||||| |||| |||||    
T  26774537 ctatctatgctctctccttcttcaaagctccgtcatgtataatctcttctattgaatatcttttaaataaatttttttggggaggaagtgaggaacatag 26774636  T
Q  304 gaaaatttcatgggtcggttgga 326  Q
    ||||||||||||| | |||||||    
T  26774637 gaaaatttcatggattggttgga 26774659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 14345204 - 14345317
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggat 298  Q
    ||||| || ||||||| ||||||||||||| | ||||||||| |||||| ||||| ||| ||||| |  ||| |||| ||||||||||||  || |||      
T  14345204 ctctgtctgtctatgctctttccttcttcaagactccatcagatataatctcttccataaaatctttactgaataaatttttttggggggttgtgaggga 14345303  T
Q  299 cataggaaaatttc 312  Q
    ||||||||||||||    
T  14345304 cataggaaaatttc 14345317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 7453199 - 7453080
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt-ggggggaagttaggatcataggaa 306  Q
    ||||||||||||| |||||||  ||||||||||||||||| |||||  |  ||||| | || | |||  |||||| |||||| ||| |||||||||| ||    
T  7453199 tctatgcactttctttcttcaaagctccatcaggtataatctcttcccttgaatctttatttaataattttttttgggggggcagtgaggatcatagaaa 7453100  T
Q  307 aatttcatgggtcggttgga 326  Q
    |||||| ||| | |||||||    
T  7453099 aatttcctggataggttgga 7453080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 12332695 - 12332576
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt-ggggggaagttaggatcataggaa 306  Q
    ||||||| || |||||||||| |||||||||||||||||| |||||  |  | ||| |||| | |||| |||||| ||||||  || |||||||||||||    
T  12332695 tctatgctctctccttcttcaaggctccatcaggtataatttcttcccttgactctatttttactaaatttttttgggggggttgtgaggatcataggaa 12332596  T
Q  307 aatttcatgggtcggttgga 326  Q
    | | || |||||| ||||||    
T  12332595 actctcttgggtcagttgga 12332576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 36158010 - 36157956
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||| || ||||||| |||||||||||||  ||||||||||||||||| |||||    
T  36158010 ctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttc 36157956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 36493228 - 36493183
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||    
T  36493228 tctatgctctttccttcttcaaggctccgtcaggtataatttcttc 36493183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 7925256 - 7925188
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| |||||    
T  7925256 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttc 7925188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 17700327 - 17700247
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggggg 288  Q
    |||||||||||||||| ||||  ||||| |||| |||||| ||||||||  ||||| | || | |||| ||||||||||||    
T  17700327 tctatgcactttcctttttcaaagctccgtcagatataatctcttctattgaatctttgttaaataaatttttttgggggg 17700247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 358
Target Start/End: Original strand, 12673392 - 12673561
Alignment:
Q  188 tgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggg 287  Q
    ||||||| | |||||| || ||||||| |||||||||||||  | ||||||  ||||||| ||||| ||| |||||||||||| |||| |||| |  |||    
T  12673392 tgtcctgactgctctgcctgtctatgctctttccttcttcaacgatccatctagtataatctcttccatagaatctcttttgaataaatttttctaaggg 12673491  T
Q  288 gaagttaggatcataggaaaatttcatgggtcggttggaggtttgtttgtatgcgaagggagtatggtggt 358  Q
    | ||| |||||||||||||||| || ||||| || ||||| | ||||||||| || | ||||| |||||||    
T  12673492 g-agtgaggatcataggaaaatctcttgggtaggatggagatctgtttgtatacggaaggagtgtggtggt 12673561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 26206202 - 26206132
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    ||||||||| || || || || |||||||||||||||||||||  ||||||||||||||||| || |||||    
T  26206202 tctgtcctgacctctttgcctgtctatgcactttccttcttcaaagctccatcaggtataatctcctctat 26206132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 649343 - 649411
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||| ||| || ||||| || ||||||| |||||||||||||  ||||||||||||||||| |||||    
T  649343 gtctgttctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttc 649411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 14843430 - 14843549
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg-ggaagttaggatcataggaa 306  Q
    ||||||| |||||||||||||  ||||| ||||||||||| |||   ||  ||||| |||| | |||| |||||||||| || ||| ||||| | |||||    
T  14843430 tctatgccctttccttcttcaaagctccgtcaggtataatctctgtcattgaatctatttttaataaatttttttggggagggagtgaggataaaaggaa 14843529  T
Q  307 aatttcatgggtcggttgga 326  Q
    |||||| ||||||| |||||    
T  14843530 aatttcctgggtcgcttgga 14843549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 327
Target Start/End: Original strand, 17577010 - 17577129
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaa 307  Q
    ||||| |||||||||| ||||  ||||| ||||||||||| ||||||||  ||||| | || | |||| ||||| ||||||| || ||||| | || ||     
T  17577010 tctattcactttcctttttcaaagctccgtcaggtataatctcttctattgaatctttgtttaataaattttttgggggggatgtgaggataaaagaaag 17577109  T
Q  308 atttcatgggtcggttggag 327  Q
    ||||| ||||| ||||||||    
T  17577110 atttcgtgggttggttggag 17577129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 15674701 - 15674631
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    |||||| || || ||||| || |||||||||||||||||||||  |||||| |||||||||| || |||||    
T  15674701 tctgtcttgacctctctgcctgtctatgcactttccttcttcaaagctccagcaggtataatctcctctat 15674631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 17605627 - 17605675
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    ||||||| |||||||| ||||  ||||||||||||||||| ||||||||    
T  17605627 tctatgcgctttcctttttcaaagctccatcaggtataatctcttctat 17605675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 18589176 - 18589140
Alignment:
Q  216 ctttccttcttcatggctccatcaggtataatatctt 252  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  18589176 ctttccttcttcaaggctccatcaggtataatctctt 18589140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 21629415 - 21629463
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    |||||||||||||||| ||||  ||||| ||||||||||| ||||||||    
T  21629415 tctatgcactttcctttttcaaagctccgtcaggtataatctcttctat 21629463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 26261611 - 26261729
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaa 307  Q
    ||||||| |||||||||||||  ||||| ||||||||||| ||||||||  ||| | |||||| |||  ||||| ||| || ||| ||||||||||||||    
T  26261611 tctatgctctttccttcttcaaagctccttcaggtataatctcttctattgaatttattttgaataatttttttggggtgggagtgaggatcataggaaa 26261710  T
Q  308 atttcatgggtcggttgga 326  Q
    ||||| ||| | |||||||    
T  26261711 atttcttggattggttgga 26261729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 6050087 - 6050042
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  6050087 tctatgcgctttccttcttcaaagctccatcaggtataatatcttc 6050042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 20207990 - 20208115
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||  || ||||| || ||||||| |||||||||||||  ||||||||| ||||||| ||||| ||  | |||||| | | |||| ||||||||    
T  20207990 gtctgtcctaacctctctgcctgtctatgcgctttccttcttcaaagctccatcatgtataatctcttccattaattctcttcttattaaatttttttgg 20208089  T
Q  285 gg-ggaagttaggatcataggaaaat 309  Q
    || || ||| ||||| ||||||||||    
T  20208090 ggtgggagtgaggataataggaaaat 20208115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 8299475 - 8299555
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggggg 288  Q
    |||||||||||||||| ||||  ||||| ||||||||||| ||||||||  ||||| | || | |||| ||||||||||||    
T  8299475 tctatgcactttcctttttcaaagctccgtcaggtataatctcttctattgaatctttgtttaataaatttttttgggggg 8299555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 10781048 - 10780968
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggggg 288  Q
    |||||||||||||||| ||||  ||||| ||||||||||| ||||||||  ||||| | || | |||| ||||||||||||    
T  10781048 tctatgcactttcctttttcaaagctccgtcaggtataatctcttctattgaatctttgttaaataaatttttttgggggg 10780968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 6885759 - 6885712
Alignment:
Q  209 ctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    |||||| |||||||||||||  ||||||||||||||||| ||||||||    
T  6885759 ctatgctctttccttcttcaaagctccatcaggtataatctcttctat 6885712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 21084728 - 21084683
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||    
T  21084728 tctatgctctttccttcttcaaggctccgtcaggtataatttcttc 21084683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 40035957 - 40036050
Alignment:
Q  217 tttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaaatt 310  Q
    ||||||||||||  ||||| ||| ||||||| || |||||  |||||||||||| || | ||||| ||| ||  || |||||||||||||||||    
T  40035957 tttccttcttcaatgctccctcatgtataatctcctctattgaatctcttttgaatatattttttggggtgggggtgaggatcataggaaaatt 40036050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 25856732 - 25856812
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggggg 288  Q
    |||||||||||||||| ||||  ||||| ||||||||||| |||| |||  ||||| | || | |||| ||||||||||||    
T  25856732 tctatgcactttcctttttcaaagctccgtcaggtataatctcttatattaaatctttgtttaataaatttttttgggggg 25856812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 42514590 - 42514522
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| |||||    
T  42514590 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttc 42514522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 44028483 - 44028568
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttga 270  Q
    ||||||| || |||||||  || ||||||| ||||||||||||| |||||||||| ||||||| ||||||||  ||||||||||||    
T  44028483 gtctgtcttgaccgctctatctgtctatgctctttccttcttcaaggctccatcatgtataatctcttctattgaatctcttttga 44028568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 26147062 - 26146943
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt-ggggggaagttaggatcataggaa 306  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||  |  | ||| |||| | |||| |||||| ||||||  || |||||||||||||    
T  26147062 tctatgctctttccttcttcaaggctccgtcaggtataatttcttccgttgactctatttttactaaatttttttgggggggctgtgaggatcataggaa 26146963  T
Q  307 aatttcatgggtcggttgga 326  Q
    | |||| |||||| ||||||    
T  26146962 actttcttgggtccgttgga 26146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 13551451 - 13551381
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    ||||||||| || || || || |||||||||||||||||||||  ||||||||||||||||| || |||||    
T  13551451 tctgtcctgacctctttgcctgtctatgcactttccttcttcaaagctccatcaggtataatctcctctat 13551381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 25380687 - 25380761
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt 282  Q
    ||||||||||||| |||||||  ||||||||||||||||| ||||||||  ||||| | |||| |||| ||||||    
T  25380687 tctatgcactttctttcttcaaagctccatcaggtataatctcttctattgaatctttattgaataaattttttt 25380761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 34357655 - 34357553
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaa 307  Q
    ||||||| ||||||||||||| |||||| | || |||||| ||||| ||  ||| | |||| |||||||    |||||||||||| ||||||||||||||    
T  34357655 tctatgctctttccttcttcaaggctccgttagatataatttcttccattgaatttatttttagtaaaaaaaattggggggaagtgaggatcataggaaa 34357556  T
Q  308 att 310  Q
    |||    
T  34357555 att 34357553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 43311106 - 43311061
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||    
T  43311106 tctatgctctttccttcttcaaggctccgtcaggtataatttcttc 43311061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 13416533 - 13416473
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctctttt 268  Q
    ||||||| ||||||||||||| ||||||| |||||| ||| ||||| ||| ||||| ||||    
T  13416533 tctatgctctttccttcttcaaggctccagcaggtacaatctcttccatagaatctatttt 13416473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 43722316 - 43722364
Alignment:
Q  205 ctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||| ||||| ||||||||||||| |||||| ||||||||||| |||||    
T  43722316 ctatttatgctctttccttcttcaaggctccgtcaggtataatttcttc 43722364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 43120945 - 43121069
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggg 285  Q
    ||||||||| || ||||| || |||||||  ||||||||||||  ||||||| ||||||||| ||||| ||  ||||| | || | |||| |||||||||    
T  43120945 tctgtcctgacctctctgtctgtctatgcgttttccttcttcaaagctccattaggtataatctcttccattgaatctttgtttaataaatttttttggg 43121044  T
Q  286 g-ggaagttaggatcataggaaaat 309  Q
    | || ||| ||||||||||||||||    
T  43121045 gtgggagtgaggatcataggaaaat 43121069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 34830239 - 34830093
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcataggaaa 307  Q
    ||||||| |||||||||||| ||||||| ||||||||||| ||| | ||  ||||| |||| | |||  ||||||||| || ||| ||||| | ||||||    
T  34830239 tctatgctctttccttcttcctggctccgtcaggtataatctctgccattgaatctatttttaataattttttttgggagggagtgaggataacaggaaa 34830140  T
Q  308 atttcatgggtcggttggaggtttgtttgtatgcgaagggagtatgg 354  Q
    ||||| ||| | | |||||| | ||||||| | || | |||||||||    
T  34830139 atttcctggattgcttggagctctgtttgtttacgtaaggagtatgg 34830093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 7164338 - 7164218
Alignment:
Q  205 ctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttggggggaagttaggatcatagg 304  Q
    |||| ||||| ||||||||||||| |||||||||||||||||| |||||  |  | ||| |||  ||| || || |||||||||  || |||||||||||    
T  7164338 ctatttatgctctttccttcttcagggctccatcaggtataatttcttcccttgactctatttgtagt-aatttctttggggggttgtgaggatcatagg 7164240  T
Q  305 aaaatttcatgggtcggttgga 326  Q
    ||||| || |||||| ||||||    
T  7164239 aaaatatcttgggtcagttgga 7164218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 40513017 - 40513146
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg-ggaagttaggatcataggaa 306  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||   ||  |||||||||| | |||| |||||||||| || ||| ||||  | |||||    
T  40513017 tctatgctctttccttcttcaaggctccgtcaggtataatctctatcattgaatctctttttaataaatttttttggggagggagtgaggaaaacaggaa 40513116  T
Q  307 aatttcatgggtcggttggaggtttgtttg 336  Q
    |||||| ||||| | |||||| | ||||||    
T  40513117 aatttcctgggtagcttggagctctgtttg 40513146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 46907940 - 46908008
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||| ||| || ||||| |||||||||| |||||||||||||  ||||||||| ||||||| |||||    
T  46907940 gtctgttctgacctctctgcctatctatgctctttccttcttcaaagctccatcaagtataatctcttc 46908008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 23819435 - 23819309
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| || ||||| || | ||||| |||||||||||||  ||||||||| ||||||| ||||| ||  ||||| | || | |||| | ||||||    
T  23819435 gtctgtcctgacctctctgcctgtatatgcgctttccttcttcaaagctccatcaagtataatctcttccattgaatctttgtttattaaattattttgg 23819336  T
Q  285 gg--ggaagttaggatcataggaaaat 309  Q
    ||  || ||| ||||||||||||||||    
T  23819335 gggtgggagtgaggatcataggaaaat 23819309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 2365148 - 2365046
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| ||||| ||  ||||| | || | |||| ||||||||    
T  2365148 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttgg 2365049  T
Q  285 ggg 287  Q
    |||    
T  2365048 ggg 2365046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 24925969 - 24926023
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||| || ||||||||||||| |||||||  ||||||||||||||||| |||||    
T  24925969 ctctgcctgtctatgcactttctttcttcaaagctccatcaggtataatctcttc 24926023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 47538135 - 47538013
Alignment:
Q  187 ctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg 286  Q
    |||||||| || ||||  || ||||||| |||||||||||||   ||||||||| |||||| ||||||||  | ||| | || | |||| |||||| |||    
T  47538135 ctgtcctgacctctctacctgtctatgcgctttccttcttcaaaactccatcagatataatctcttctattgattctttatttattaaattttttttggg 47538036  T
Q  287 ggaagttaggatcataggaaaat 309  Q
    || ||| ||||||||| ||||||    
T  47538035 gggagtgaggatcatatgaaaat 47538013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 52907337 - 52907383
Alignment:
Q  210 tatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    ||||| |||||||||||||  ||||||||||||||||| ||||||||    
T  52907337 tatgccctttccttcttcaaagctccatcaggtataatctcttctat 52907383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 48569316 - 48569361
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  48569316 tctatgcactttcctttttcaaagctccatcaggtataatctcttc 48569361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 52250418 - 52250463
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||    
T  52250418 tctatgcgctttccttcttcaaggctccgtcaggtataatttcttc 52250463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 6175761 - 6175876
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt--ggggggaagttagg 296  Q
    ||||| || |||||||||||||||||||||   ||||| |||||||||| || |||||  ||||| | || | |||  ||||||  |||||| ||| |||    
T  6175761 ctctgcctgtctatgcactttccttcttcaaaactccaacaggtataatctcctctattgaatctttgttaattaatttttttttggggggggagtgagg 6175860  T
Q  297 atcataggaaaatttc 312  Q
    || |||||||||||||    
T  6175861 ataataggaaaatttc 6175876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 8130820 - 8130760
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctctttt 268  Q
    ||||||| ||||||||||||| ||||||| |||||| ||| ||||| ||| ||||| ||||    
T  8130820 tctatgctctttccttcttcaaggctccagcaggtagaatctcttccatagaatctatttt 8130760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 17708928 - 17708860
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    |||||| ||| || ||||| || |||||||||||||||||||||  ||||||||||||||||| |||||    
T  17708928 gtctgttctgacctctctgcctgtctatgcactttccttcttcaaagctccatcaggtataatctcttc 17708860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 26721500 - 26721378
Alignment:
Q  188 tgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg- 286  Q
    ||||||| || ||||| || ||||||| |||||||||||||  ||||||||||||||||| ||||| ||  | |||||| | |  ||| ||||||||||     
T  26721500 tgtcctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataatctcttccattaattctcttcttataaaatttttttggggt 26721401  T
Q  287 ggaagttaggatcataggaaaat 309  Q
    || ||| ||||| ||||||||||    
T  26721400 gggagtgaggataataggaaaat 26721378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 3544394 - 3544513
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgggg-ggaagttaggatcataggaa 306  Q
    ||||||| |||||||||||||  ||||| ||||||||||| |||   ||  ||||| |||| | |||| |||||||||| || ||| ||||| | |||||    
T  3544394 tctatgccctttccttcttcaaagctccgtcaggtataatctctgtcattgaatctatttttaataaatttttttggggagggagtgaggataacaggaa 3544493  T
Q  307 aatttcatgggtcggttgga 326  Q
    |||||| ||||||| |||||    
T  3544494 aatttcctgggtcgcttgga 3544513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 5497955 - 5497885
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    ||||||||| || || || || |||||||| ||||||||||||  ||||||||||||||||| || |||||    
T  5497955 tctgtcctgacctctttgcctgtctatgcaatttccttcttcaaagctccatcaggtataatctcctctat 5497885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 32352583 - 32352653
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctat 256  Q
    |||||| || || ||||| || |||||||||||||||||||||  |||||| |||||||||| || |||||    
T  32352583 tctgtcttgacctctctgcctgtctatgcactttccttcttcaaagctccagcaggtataatctcctctat 32352653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 6051473 - 6051372
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| ||||| ||  ||||| | || | |||| ||||||||    
T  6051473 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttgg 6051374  T
Q  285 gg 286  Q
    ||    
T  6051373 gg 6051372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 21409022 - 21408977
Alignment:
Q  273 aaaattttttggggggaagttaggatcataggaaaatttcatgggt 318  Q
    ||||||||| ||| || ||| |||||||||||||||||||||||||    
T  21409022 aaaatttttggggtgggagtgaggatcataggaaaatttcatgggt 21408977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 45271088 - 45271043
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||    
T  45271088 tctatgctctttccttcttcaaggctccgtcaggtataatttcttc 45271043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 3074505 - 3074473
Alignment:
Q  294 aggatcataggaaaatttcatgggtcggttgga 326  Q
    ||||||||||||||||||||||||| |||||||    
T  3074505 aggatcataggaaaatttcatgggttggttgga 3074473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 8402 - 8340
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataat 247  Q
    |||||||||| || ||||| || ||||||| |||||||||||||  |||||||||||||||||    
T  8402 gtctgtcctgacctctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataat 8340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 13322 - 13274
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataat 247  Q
    ||||| || ||||||| |||||||||||||  |||||||||||||||||    
T  13322 ctctgcctgtctatgcgctttccttcttcaaagctccatcaggtataat 13274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 414
Target Start/End: Complemental strand, 29557998 - 29557850
Alignment:
Q  263 tcttttgagtaaaattttttggggggaagttaggatcataggaaaatttcatgggtcggttggaggtttgtttgtatgcgaagggagtatggtggtctgg 362  Q
    |||||| | |||||| ||||||||   ||| |||||||||||||||| || ||||| |  ||||||| |||||||||| | |  |||||||||||  | |    
T  29557998 tcttttaaataaaatattttgggg---agtgaggatcataggaaaatctcttgggtagaatggaggtctgtttgtatgaggaacgagtatggtgggtttg 29557902  T
Q  363 aggttaggcaattaagatagtttaacaaggcattgttaggaaagtgatgatg 414  Q
     |||||||||||| ||  | |||||| |||| ||||| |||||||| |||||    
T  29557901 gggttaggcaattgagggaatttaacgaggcgttgttgggaaagtggtgatg 29557850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 4078133 - 4078078
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttct 254  Q
    ||||| || ||||||| |||||||||||||  ||||||||||||||||| ||||||    
T  4078133 ctctgcctgtctatgcgctttccttcttcagagctccatcaggtataatctcttct 4078078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 27218415 - 27218454
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataat 247  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  27218415 tctatgcactttccttcttcaaggctccgtcaggtataat 27218454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 33820830 - 33820897
Alignment:
Q  186 tctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||||| || ||||| |||||||||  |||||||||||||  |||||||||||||| || |||||    
T  33820830 tctgtcctgacctctctgcctatctatgttctttccttcttcaaagctccatcaggtattatctcttc 33820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 6335685 - 6335759
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt 282  Q
    ||||||| ||||||||||||| ||||||| || ||| ||| ||||| ||| |||||||||||  |||| ||||||    
T  6335685 tctatgctctttccttcttcaaggctccagcatgtacaatctcttccatagaatctcttttgtctaaattttttt 6335759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 6335773 - 6335827
Alignment:
Q  283 ggggggaagttaggatcataggaaaatttcatgggtcggttggaggtttgtttgt 337  Q
    |||||| ||| |||| |||||||||||||| ||||| |||||||||| |||||||    
T  6335773 gggggggagtgaggaacataggaaaatttcttgggtaggttggaggtctgtttgt 6335827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 22818989 - 22819047
Alignment:
Q  187 ctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtata 245  Q
    |||||||| || ||||  || |||||||||||||||||||||  |||||||||||||||    
T  22818989 ctgtcctgtcctctcttcctgtctatgcactttccttcttcagagctccatcaggtata 22819047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 4937398 - 4937499
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| ||||| ||  ||||| | || | |||| ||||||||    
T  4937398 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttgg 4937497  T
Q  285 gg 286  Q
    ||    
T  4937498 gg 4937499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 29917067 - 29916966
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt-ggggggaagttaggatcataggaa 306  Q
    |||||||||||||||||||||  ||||| ||||||| ||| ||||||||  ||||| | |||| |||  |||||| ||| |||||| |||||| ||| ||    
T  29917067 tctatgcactttccttcttcaaagctccctcaggtacaatctcttctattgaatctttattgattaattttttttagggtggaagtgaggatcttagaaa 29916968  T
Q  307 aa 308  Q
    ||    
T  29916967 aa 29916966  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 34232548 - 34232503
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||||| |||||||||||||  ||||||||||||||||| |||||    
T  34232548 tctatgcgctttccttcttcaaagctccatcaggtataatctcttc 34232503  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 28621 - 28509
Alignment:
Q  208 tctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaatttttt-ggggggaagttaggatcataggaa 306  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||  |  | ||| |||| | |||| |||||| ||||||  || |||||||||||||    
T  28621 tctatgctctttccttcttcaaggctccgtcaggtataatttcttccgttgactctatttttactaaatttttttgggggggctgtgaggatcataggaa 28522  T
Q  307 aatttcatgggtc 319  Q
    | |||| ||||||    
T  28521 actttcttgggtc 28509  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 182971 - 182917
Alignment:
Q  199 ctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttc 253  Q
    ||||| || |||||||||||||||||||||  ||||||| ||||||||| |||||    
T  182971 ctctgcctgtctatgcactttccttcttcaaagctccattaggtataatctcttc 182917  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 105113 - 105214
Alignment:
Q  185 gtctgtcctggccgctctggctatctatgcactttccttcttcatggctccatcaggtataatatcttctatataatctcttttgagtaaaattttttgg 284  Q
    |||||||||| | |||||  || |||||||||||||||||||||  |||||  |||||||||| ||||| ||  ||||| | || | |||| ||||||||    
T  105113 gtctgtcctgactgctctacctgtctatgcactttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttgg 105212  T
Q  285 gg 286  Q
    ||    
T  105213 gg 105214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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