View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0900_low_14 (Length: 415)
Name: NF0900_low_14
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_14 |
 | |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: scaffold0479 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 415
Target Start/End: Complemental strand, 982 - 578
Alignment:
| Q |
22 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct--------attcgtgctttgtatctgggatttgagttg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
982 |
catcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttg |
883 |
T |
|
| Q |
114 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
882 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtttcattctcctttagggatt |
783 |
T |
|
| Q |
214 |
tcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
782 |
gcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctttgtgaagtttacata |
683 |
T |
|
| Q |
314 |
ttcacctgagaagtatcttcttgat-gatgtc--catctcattgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatc |
410 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
682 |
ttcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcatcatcatcatctgccata |
583 |
T |
|
| Q |
411 |
tgctc |
415 |
Q |
| |
|
||||| |
|
|
| T |
582 |
tgctc |
578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 415
Target Start/End: Complemental strand, 33814882 - 33814478
Alignment:
| Q |
22 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct--------attcgtgctttgtatctgggatttgagttg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||| |
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|
| T |
33814882 |
catcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacttggggtttgggttg |
33814783 |
T |
|
| Q |
114 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814782 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
33814683 |
T |
|
| Q |
214 |
tcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacata |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |
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|
| T |
33814682 |
tcatctcttcttccatggattgtaaccatttttccttattggttgtctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacata |
33814583 |
T |
|
| Q |
314 |
ttcacctgagaagtatcttcttgat-gatgtc--catctcattgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatc |
410 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814582 |
ttcacctgagaagtatctttttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatc |
33814483 |
T |
|
| Q |
411 |
tgctc |
415 |
Q |
| |
|
||||| |
|
|
| T |
33814482 |
tgctc |
33814478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 33809964 - 33809913
Alignment:
| Q |
22 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttga |
73 |
Q |
| |
|
|||| |||||||||| || || |||| ||||||||||||||||||||||||| |
|
|
| T |
33809964 |
catcttcaccaccggggaaaacattttttcaaaatcaatgcctttcttttga |
33809913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 415
Target Start/End: Original strand, 54969165 - 54969569
Alignment:
| Q |
22 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct--------attcgtgctttgtatctgggatttgagttg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
54969165 |
catcttcaccaccggtgagaatatttcttcaaaatcaacgtctttcttttgatggcaccccttcacgactattcgtgccttgtatctgggatttgggttg |
54969264 |
T |
|
| Q |
114 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
54969265 |
ttctcttcagacttgagtttaaacacccatttatttttcaatgccctctttccatctggtaatttgaccaggtcatacgtgtcattctcctttagggatt |
54969364 |
T |
|
| Q |
214 |
tcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54969365 |
gcatctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacata |
54969464 |
T |
|
| Q |
314 |
ttcacctgagaagtatcttcttgat-gatgtc--catctcattgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatc |
410 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
54969465 |
ttcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcatcatcatcatctgccata |
54969564 |
T |
|
| Q |
411 |
tgctc |
415 |
Q |
| |
|
||||| |
|
|
| T |
54969565 |
tgctc |
54969569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 402
Target Start/End: Original strand, 4283981 - 4284369
Alignment:
| Q |
22 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct-----attcgtgctttgtatctgggatttgagttgttc |
116 |
Q |
| |
|
|||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||| || || |||||||||||| |
|
|
| T |
4283981 |
catcttcatcactggtgagaatttttcttcaaaatcaatgcctttcttttgatggcattccttcacgactcgtgctttgtacctagggtttgagttgttc |
4284080 |
T |
|
| Q |
117 |
tcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttca |
216 |
Q |
| |
|
| ||||||| |||| |||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||| || | ||||||||||||||| || |
|
|
| T |
4284081 |
tattcagacatgagcttgaacacccgtttatttttcaatgccctatttccattcagtaattttaccaagtcatatgtttggttctcctttagggatggca |
4284180 |
T |
|
| Q |
217 |
tctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattc |
316 |
Q |
| |
|
| ||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| | ||| | || || |||| || ||| |
|
|
| T |
4284181 |
tttcttcttgaatgcattgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccctttcattagtaaaatttatattttc |
4284280 |
T |
|
| Q |
317 |
acctgagaagtatcttcttgatgat-gtc--catctcattgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcat |
402 |
Q |
| |
|
| ||||||||| || ||| |||| ||| |||| |||||||||| ||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4284281 |
atgtgagaagtaactctttgttgatcgtctagatcttgttgatcttcttaatagaggttcttgttccatctcatcatcaccatcatcat |
4284369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 281 - 415
Target Start/End: Original strand, 13563709 - 13563846
Alignment:
| Q |
281 |
ttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatgat-gtcca--tctcattgatcttctcaattgaggttcttgt |
377 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
13563709 |
ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgt |
13563808 |
T |
|
| Q |
378 |
tccatctcaacatcaacatcatcatatgccatctgctc |
415 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
13563809 |
tccatctcaacatcatcatcatcatctgccatatgctc |
13563846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 9754277 - 9754649
Alignment:
| Q |
30 |
ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct--------attcgtgctttgtatctgggatttgagttgttctcttc |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9754277 |
ccaccgatgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttc |
9754376 |
T |
|
| Q |
122 |
agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct |
221 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9754377 |
agacttaagtttgaacacccatttatttttcaatgccctctttccatttggcaattttaccaggtcatacgtctcattctcctttagggattgcatctct |
9754476 |
T |
|
| Q |
222 |
tcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattcacctg |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
9754477 |
tcttccatggattacaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcacctg |
9754576 |
T |
|
| Q |
322 |
agaagtatcttcttgat-gatgtc--catctcattgatcttctcaattgaggttcttgttccatctcaacatc |
391 |
Q |
| |
|
||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9754577 |
agaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatc |
9754649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 4837499 - 4837704
Alignment:
| Q |
22 |
catcatcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct--------attcgtgctttgtatctgggatttgagttg |
113 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||| |||| |
|
|
| T |
4837499 |
catcctcaccactggtgagaatatttcttcaaaatcaatgcctttctttcgatggcaccccttcacgactatttgtgctttgtatatgggatttgggttg |
4837598 |
T |
|
| Q |
114 |
ttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4837599 |
ttctcttcagacttgagtttgaacacccacttgtttttcaacgccctctttccatctggtaattttaccagatcatacgtctcattctcctttagggatt |
4837698 |
T |
|
| Q |
214 |
tcatct |
219 |
Q |
| |
|
||||| |
|
|
| T |
4837699 |
gcatct |
4837704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 249 - 415
Target Start/End: Original strand, 4837704 - 4837873
Alignment:
| Q |
249 |
ttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattcacctgagaagtatcttcttgatg-atgtc--c |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
4837704 |
ttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatgtttgtctag |
4837803 |
T |
|
| Q |
346 |
atctcattgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatctgctc |
415 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |||||||||||||| || |||||| |||||| ||||| |
|
|
| T |
4837804 |
atctcgttgatcttctcagttgaggttcttgtaccatctcaacatcatcaccatcatctgccatatgctc |
4837873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 1130083 - 1130219
Alignment:
| Q |
28 |
caccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcacccct--------attcgtgctttgtatctgggatttgagttgttctct |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||| | ||| || | ||||||||| |
|
|
| T |
1130083 |
caccaccgatgagaatatttcttcaaaatcattgcctttattttgatggcgccccttagcgacaattcgtgctttgtacccggggttcaacttgttctct |
1130182 |
T |
|
| Q |
120 |
tcagacttgagtttgaacacccatttatttttcaatg |
156 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1130183 |
tcagacttgagtttgaacatccaattatttttcaatg |
1130219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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