View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_16 (Length: 401)
Name: NF0900_low_16
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 87 - 373
Target Start/End: Original strand, 4132321 - 4132626
Alignment:
| Q |
87 |
catcatcaactaactgaatgatctacttctaggtgcaagtgaacataaatgtttacctttgagccttggcaaagtaaacaatatcctatcagaatgttta |
186 |
Q |
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| T |
4132321 |
catcatcaactaactgaatgatctacttctaggtgcaagtgaacataaatgtttacctttgagccttggcaaagtaaacaatatcctatcagaatgttta |
4132420 |
T |
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| Q |
187 |
tcac-------------------catattacaaatatgcatgttcagaatttaggaccattgatcatcaaccaaaggtgtattatttacaattaattcta |
267 |
Q |
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| T |
4132421 |
tcaccatattacaaatatgtcaccatattacaaatatgcatgttcagaatttaggaccattgatcatcaaccaaaggtgtattatttacaattaattcta |
4132520 |
T |
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| Q |
268 |
taacagagatttactggagaaatcagaattttttacctccatgtttttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagac |
367 |
Q |
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| T |
4132521 |
taacagagatttactagagaaatcagaattttttacctccatgtttttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagac |
4132620 |
T |
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| Q |
368 |
ctgact |
373 |
Q |
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|||||| |
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| T |
4132621 |
ctgact |
4132626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 4109367 - 4109436
Alignment:
| Q |
299 |
tttacctccatgtttttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacc |
368 |
Q |
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| T |
4109367 |
tttacctccatgtttttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggacc |
4109436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 4109118 - 4109195
Alignment:
| Q |
97 |
taactgaatgatctacttctaggtgcaagtgaa--cataaatgtttacctttgagccttggcaaagtaaacaatatcc |
172 |
Q |
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||||||||||||||| || ||||||||| ||| |||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
4109118 |
taactgaatgatctatttttaggtgcaaatgagagcataaatgttcacctttgaagtttgccaaagtaaacaatatcc |
4109195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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