View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_18 (Length: 385)
Name: NF0900_low_18
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 43 - 290
Target Start/End: Original strand, 28731551 - 28731798
Alignment:
| Q |
43 |
ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacgacgt |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28731551 |
ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacaacgt |
28731650 |
T |
|
| Q |
143 |
caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatgacagtgaagaagatttc |
242 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |
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| T |
28731651 |
caccggaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaagagttttccatggcggtgaagaagatttc |
28731750 |
T |
|
| Q |
243 |
aagtctcaagagagtggattcgagtgtgaaatgaagggaatgatgatg |
290 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
28731751 |
aagtctcaagagagtgaattcgagtgtgaaatgaatggaatgatgatg |
28731798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28731430 - 28731477
Alignment:
| Q |
1 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt |
48 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731430 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt |
28731477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 43 - 290
Target Start/End: Original strand, 38121977 - 38122232
Alignment:
| Q |
43 |
ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacgacgt |
142 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38121977 |
ggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacctcgt |
38122076 |
T |
|
| Q |
143 |
caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatgacagtgaagaaga---- |
238 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| || ||||||| |
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| T |
38122077 |
caccggaaagcatggcggtgaagaagattgcgaagaagagcatagagaatcgcatagaggaaaaggttgaagagttttccatggtggttaagaagattca |
38122176 |
T |
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| Q |
239 |
----tttcaagtctcaagagagtggattcgagtgtgaaatgaagggaatgatgatg |
290 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||| |||||| |||| |
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|
| T |
38122177 |
gaggtttcaagtctcaagagagtgaattcgagtgtgaattgaatcgaatgaagatg |
38122232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 38608146 - 38607967
Alignment:
| Q |
43 |
ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacgacgt |
142 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| || |
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| T |
38608146 |
ggaagtaatgtggtgtgagagaagaacgaatgttcttgaagatcatgtggaggtagcggtgggattgaaggttcgaaaccttcagtggcggtgaccttgt |
38608047 |
T |
|
| Q |
143 |
caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatg |
225 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| || |||||||| |
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| T |
38608046 |
caccggaaagcatgacggtgaagaagattgcg---aagagcatcgagaatcgaagagaagaaaaggttgaagagctttccatg |
38607967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 38792929 - 38792750
Alignment:
| Q |
43 |
ggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttcagtggcggtgacgacgt |
142 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| || |
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| T |
38792929 |
ggaagtaatgtggtgtgagagaagaacgaatgttcttgaagatcatgtggaggtagcggtgggattgaaggttcgaaaccttcagtggcggtgaccttgt |
38792830 |
T |
|
| Q |
143 |
caccagaaagcatggcggtgaagaagattgcgaagaagagcatcgagaatcgcagagaggaaaaggttgaatagttttccatg |
225 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| || |||||||| |
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| T |
38792829 |
caccggaaagcatgacggtgaagaagattgcg---aagagcatcgagaatcgaagagaagaaaaggttgaagagctttccatg |
38792750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38121856 - 38121903
Alignment:
| Q |
1 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38121856 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaggggaagt |
38121903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31529384 - 31529431
Alignment:
| Q |
1 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt |
48 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
31529384 |
atcagagggagcgaaaatagtgaaaggaccggtccaagcaggggaagt |
31529431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51801452 - 51801499
Alignment:
| Q |
1 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt |
48 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
51801452 |
atcagagggagcgaaaatagtgaaaggaccggtccaagcaggggaagt |
51801499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 31529505 - 31529533
Alignment:
| Q |
43 |
ggaagtaatgcagtgtgagagaagaacga |
71 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31529505 |
ggaagtaatgcagtgtgagagaagaacga |
31529533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 51801573 - 51801601
Alignment:
| Q |
43 |
ggaagtaatgcagtgtgagagaagaacga |
71 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51801573 |
ggaagtaatgcagtgtgagagaagaacga |
51801601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34875836 - 34875789
Alignment:
| Q |
1 |
atcagagggagcgaaaatggtgaaaggaccggtccaagcaagggaagt |
48 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||| ||||||| |
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|
| T |
34875836 |
atcaaagggagcaaaaatagtgaaaggaccggtccaagcaggggaagt |
34875789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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