View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_2 (Length: 562)
Name: NF0900_low_2
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_2 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 71 - 562
Target Start/End: Complemental strand, 16064516 - 16064026
Alignment:
| Q |
71 |
tctgctacttcataatcctcttgatcttcttgaagttgttctatgtcttcattggggttacaaggatcgacttcatccattgactggcattcggtacatg |
170 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16064516 |
tctgctgcttcataatcctcttgatattcttgaagttgttctatgtcttcattggggttacaaggatcgacttcatccattgactggcattcggtacctg |
16064417 |
T |
|
| Q |
171 |
catctttccttatgttatcctgtgagatattgtgtatcaagtatttacgttttcagcataatctccttatattctaagttaattcgtgcctgtgcagtgg |
270 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16064416 |
catctttccttattttatcctgtgagatattgtgtatcaagtatttacgtttgcaacataatctccttatattctaagttaattcgtgcctgtg-agtgg |
16064318 |
T |
|
| Q |
271 |
ccagaaaaggtctacccaaagcgactggacaattaggtacgttcatcactactatgttttctaagaactcgtagtcttctactacaaccttcacatttag |
370 |
Q |
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||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064317 |
ccagaaaaggtttacccaaagtgactggacaattaggtacattcatcactactatgttttctaagaactcgtagtcttctactacaaccttcacatttag |
16064218 |
T |
|
| Q |
371 |
cactactccctatggttcttcttaagttctgttaactaacgttattaactgtttcaggtagtgtcatcatgagtctttcgatctttctgaatttcgcaag |
470 |
Q |
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||||||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064217 |
cactactccctctggttcttcttaagttctgtcagctaacgttattaactgttttaggtagtgtcatcatgagtctttcgatctttctgaatttcgcaag |
16064118 |
T |
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| Q |
471 |
cgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaatggatattagaacattgaagctccctggat |
562 |
Q |
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| T |
16064117 |
cgacgtcaggttgattttatctcctaattcacataaaacattccgcaagaatacaccattaatggatattagaacattgaagctccctggat |
16064026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 379
Target Start/End: Original strand, 6040739 - 6040851
Alignment:
| Q |
267 |
gtggccagaaaaggtctacccaaagcgactggacaattaggtacgttcatcactactatgttttctaagaactcgtagtcttctactacaaccttcacat |
366 |
Q |
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||||| ||||||| ||| ||||||| |||||||||| ||| || |||||||||||||| | ||||| | | |||||||||| ||||||| ||||| |
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| T |
6040739 |
gtggcaagaaaagttctgcccaaagttactggacaatctggtttgtccatcactactatgtccgccaagaatttgaagtcttctacaacaacctgcacat |
6040838 |
T |
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| Q |
367 |
ttagcactactcc |
379 |
Q |
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| T |
6040839 |
taagcaccactcc |
6040851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 225 - 557
Target Start/End: Complemental strand, 18385611 - 18385280
Alignment:
| Q |
225 |
agcataatctccttatattctaagttaattcgtgcctgtgcagtggccagaaaaggtctacccaaagcgactggacaattaggtacgttcatcactacta |
324 |
Q |
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||||| |||||||| ||||||||||| ||||| | ||||||||||| | ||||||||| ||||||| ||||||||||| ||||| || ||| |||| || |
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| T |
18385611 |
agcatgatctccttgtattctaagttgattcgggtttgtgcagtggctaaaaaaggtctgcccaaagtgactggacaatcaggtatgtccattactagta |
18385512 |
T |
|
| Q |
325 |
tgttttctaagaactcgtagtcttctactacaaccttcacatttagcactactccctatggttcttcttaagttctgttaactaacgttattaactgttt |
424 |
Q |
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||| | ||||||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||||||||| ||||| | | ||| | || || || ||| |
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| T |
18385511 |
tgtatgctaagaactcgaagtcttatactgcaaccttcacatttaacactactccctctggttcttcttcagttccatcagctacccgtactagct-ttt |
18385413 |
T |
|
| Q |
425 |
caggtagtgtcatcatgagtctttcgatctttctgaatttcgcaagcgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatac |
524 |
Q |
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|| | | |||||||||||||||| |||||||||||| | ||||| || ||||||||||||| ||||||| ||||||||| ||| ||||||||||| |
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| T |
18385412 |
caactgatatcatcatgagtctttcaatctttctgaatgttgcaagtgacatcaggttgattttggctcctaaatcacataaagcatcacccaagaatac |
18385313 |
T |
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| Q |
525 |
atcattaatggatattagaacattgaagctccc |
557 |
Q |
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| T |
18385312 |
accattaatagagattggaacattgaagctccc |
18385280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 105 - 562
Target Start/End: Complemental strand, 16782859 - 16782398
Alignment:
| Q |
105 |
gttgttctatgtcttcattggggttacaaggatcgacttcatccattgactggcattcggtacatgcatctttccttatgttatcctgtgagatattgtg |
204 |
Q |
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|||||||||||||||||| | ||| |||||||||| || |||| || |||||||| |||| |||||||||||||||||||||||| || || | || |
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| T |
16782859 |
gttgttctatgtcttcatgagatttataaggatcgacgtcctccactgtatggcattcagtacctgcatctttccttatgttatcctgcgaaatttgatg |
16782760 |
T |
|
| Q |
205 |
tatcaagtatttacgtttt-----cagcataatctccttatattctaagttaattcgtgcctgtgcagtggccagaaaaggtctacccaaagcgactgga |
299 |
Q |
| |
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|||||||||||||| | || || || |||||||| |||||||| || ||||| || |||||| |||||| ||||||||| |||| || |||||| |
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| T |
16782759 |
tatcaagtatttacctcttgccttcaacacgatctccttgtattctaatttgattcgggcttgtgcaatggccaaaaaaggtctgcccagagttactgga |
16782660 |
T |
|
| Q |
300 |
caattaggtacgttcatcactactatgttttctaagaactcgtagtcttctactacaaccttcacatttagcactactccctatggttcttcttaagttc |
399 |
Q |
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|||| | ||| || ||| ||||| |||| | ||||||||||| ||||||||| | ||||||||||||||| ||| ||||| | ||||||||||| ||||| |
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| T |
16782659 |
caatcatgtatgtccattactacaatgtctgctaagaactcgaagtcttctattgcaaccttcacatttaacaccactccttctggttcttctttagttc |
16782560 |
T |
|
| Q |
400 |
tgttaactaacgttattaactgtttcaggtagtgtcatcatgagtctttcgatctttctgaatttcgcaagcgatgtcaggttgattttatctcctaatt |
499 |
Q |
| |
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||| | ||| | | | || || |||||| | | ||||||| |||| || |||||||| ||| | ||||| | ||||||||||||| ||||||||| |
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| T |
16782559 |
tgtcagctaccctcaatagct-tttcagttggcatcatcataagtccatcaatctttctaaatgttacaagcaacatcaggttgatttttgctcctaatt |
16782461 |
T |
|
| Q |
500 |
cacataaaacattccccaagaatacatcattaatggatattagaacattgaagctccctggat |
562 |
Q |
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|||||||| |||||||||||| ||| ||||||| || ||| |||||||||||||||| |||| |
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| T |
16782460 |
cacataaacaattccccaagaaaacaccattaatagagattggaacattgaagctcccaggat |
16782398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 25232726 - 25232862
Alignment:
| Q |
231 |
atctccttatattctaagttaattcgtgcctgtgcagtggccagaaaaggtctacccaaagcgactggacaattaggtacgttcatcactactatgtttt |
330 |
Q |
| |
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|||||||| ||||||||||| ||||| || ||| ||||||||| |||||||| |||| | ||||||||||| ||||| || || |||||||||| | |
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| T |
25232726 |
atctccttgtattctaagttgattcgggcatgtacagtggccaagaaaggtctgcccataatgactggacaatcaggtatgtccaatactactatgtcct |
25232825 |
T |
|
| Q |
331 |
ctaagaactcgtagtcttctactacaaccttcacatt |
367 |
Q |
| |
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| ||||| | | ||||||||||| |||||| |||||| |
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| T |
25232826 |
ccaagaatttgaagtcttctactgcaacctgcacatt |
25232862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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