View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_21 (Length: 378)
Name: NF0900_low_21
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 27268052 - 27268408
Alignment:
| Q |
11 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgcggagaacaatgt |
110 |
Q |
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| T |
27268052 |
cagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
27268151 |
T |
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| Q |
111 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
27268152 |
ccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactatatcctcaag |
27268251 |
T |
|
| Q |
211 |
ctccttcacaggagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaatacaattttctttgtattccaaacttttatctttgttca |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268252 |
ctccttcacaggagaatccccccagccgtccctggtatcatggtatgtgaaactaaccaaatacaattttctttgtattccaaacttttatctttgttca |
27268351 |
T |
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| Q |
311 |
tacaatatgaagcaacgacacaggtacagacaacaggcacgatactaacacgttcat |
367 |
Q |
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| T |
27268352 |
tacaatatgaagcaacgacacaggtacagacaccaggcacgatactaacacgttcat |
27268408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 21195517 - 21195781
Alignment:
| Q |
11 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgcggagaacaatgt |
110 |
Q |
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| T |
21195517 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
21195616 |
T |
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| Q |
111 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
210 |
Q |
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| T |
21195617 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
21195716 |
T |
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| Q |
211 |
ctccttcacaggagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
275 |
Q |
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| T |
21195717 |
ctccttcacaggagaattccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
21195781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 27251266 - 27251530
Alignment:
| Q |
11 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgcggagaacaatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27251266 |
cagagatcttgctggatggagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
27251365 |
T |
|
| Q |
111 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251366 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
27251465 |
T |
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| Q |
211 |
ctccttcacaggagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
275 |
Q |
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||||||||||||||||| ||||| || ||||||| ||||||||||||||| |||||||||||||| |
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| T |
27251466 |
ctccttcacaggagaattccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
27251530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 49364732 - 49364671
Alignment:
| Q |
101 |
agaacaatgtccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgag |
162 |
Q |
| |
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|||||||||||| |||||||| ||| | |||||||||||||||||||| || || |||||| |
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| T |
49364732 |
agaacaatgtcctttttgagggaattttgctcaagcctagcatggttacacctggtgctgag |
49364671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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