View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_22 (Length: 375)
Name: NF0900_low_22
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 37705173 - 37705498
Alignment:
| Q |
1 |
caactaaataacttaaaagacttatggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaat |
100 |
Q |
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| T |
37705173 |
caactaaataacttaaaagacttatggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaat |
37705272 |
T |
|
| Q |
101 |
ttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgt |
200 |
Q |
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| T |
37705273 |
ttataatttcttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgccatcggatatcgatactcaactcgt |
37705372 |
T |
|
| Q |
201 |
gagttctacggtagaccacctttataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgtttgttcagtgcaa |
300 |
Q |
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| T |
37705373 |
gggttctacggtagaccacctttataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgtttgttcagtgcaa |
37705472 |
T |
|
| Q |
301 |
gctacaaaacaaattacattctcccc |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37705473 |
gctacaaaacaaattacattctcccc |
37705498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 37437914 - 37438116
Alignment:
| Q |
40 |
tttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaa |
139 |
Q |
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| T |
37437914 |
tttattttatgtgttttttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaa |
37438013 |
T |
|
| Q |
140 |
tgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcat |
239 |
Q |
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|||| |||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||| |
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| T |
37438014 |
tgcactgagcatataaaaagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcat |
37438113 |
T |
|
| Q |
240 |
gga |
242 |
Q |
| |
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||| |
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| T |
37438114 |
gga |
37438116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
| Q |
133 |
aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt |
232 |
Q |
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||||||||||| |||||| |||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
37700646 |
aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt |
37700745 |
T |
|
| Q |
233 |
tcatcatg |
240 |
Q |
| |
|
|||||||| |
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|
| T |
37700746 |
tcatcatg |
37700753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 37438187 - 37438243
Alignment:
| Q |
248 |
tttcttatatttacgactaagtgggtgacttgattgatgtttgttcagtgcaagcta |
304 |
Q |
| |
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|||| ||||||| |||||||| ||||||||||||| ||| |||||||||| ||||| |
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| T |
37438187 |
tttcctatatttgcgactaagacggtgacttgattggtgtatgttcagtgcgagcta |
37438243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
| Q |
59 |
ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa |
158 |
Q |
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|||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | |||||||||||| |
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| T |
16840796 |
ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa |
16840697 |
T |
|
| Q |
159 |
gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt |
232 |
Q |
| |
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|||||||||| | |||||| |||| | |||||||||||||||||||||| ||| ||||| ||||||| |||| |
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| T |
16840696 |
gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt |
16840622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 16840535 - 16840490
Alignment:
| Q |
248 |
tttcttatatttacgactaagtgggtgacttgattgatgtttgttc |
293 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
16840535 |
tttcttatatttacgactaagacgatgacttgattgatgtttgttc |
16840490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
| Q |
57 |
ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta |
124 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| ||||||| |
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| T |
8266027 |
tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta |
8265959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
| Q |
89 |
atttctttaaatttataattttttcaaagtttgtta |
124 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |
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| T |
21595162 |
atttctttaaattcataattttttcaaagtttgtta |
21595127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
| Q |
58 |
tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta |
124 |
Q |
| |
|
|||| |||||||||||||||||| | || | |||| ||||||||||||||||| ||||||||||||| |
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| T |
2125101 |
ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta |
2125168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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