View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_23 (Length: 373)

Name: NF0900_low_23
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_23
NF0900_low_23
[»] chr4 (14 HSPs)
chr4 (163-344)||(27505833-27506014)
chr4 (163-273)||(27479800-27479910)
chr4 (163-340)||(27486795-27486992)
chr4 (163-273)||(27469359-27469469)
chr4 (163-264)||(27523534-27523635)
chr4 (166-260)||(27513910-27514004)
chr4 (161-273)||(27526241-27526350)
chr4 (161-273)||(27476589-27476698)
chr4 (163-273)||(27473793-27473901)
chr4 (281-337)||(27479715-27479771)
chr4 (163-273)||(27466722-27466830)
chr4 (163-258)||(27500469-27500561)
chr4 (166-261)||(27516743-27516835)
chr4 (169-261)||(27498329-27498418)
[»] chr5 (2 HSPs)
chr5 (224-261)||(1754430-1754467)
chr5 (284-340)||(1754502-1754558)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 163 - 344
Target Start/End: Original strand, 27505833 - 27506014
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27505833 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 27505932  T
Q  263 tgtgttgaaaataaagacttgtttgtaaatagaatgctcaagtttctgaatttcaaatgcttttggttgtgaatgattgtgt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27505933 tgtgttgaaaataaagacttgtttgtaaatagaatgctcaagtttctgaatttcaaatgcttttggttgtgaatggttgtgt 27506014  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 27479910 - 27479800
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 262  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27479910 acgtatactgctagatagccttttggcacgtccaaaccttttgaagatgatgcccttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 27479811  T
Q  263 tgtgttgaaaa 273  Q
    |||||||||||    
T  27479810 tgtgttgaaaa 27479800  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 27486992 - 27486795
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 262  Q
    ||||||||||||||||| |||||||| || |||| | ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  27486992 acgtacactgctagatatccctttggaacgtccacagcttttgaagatgatgcccttgatctgatgatacttggtaaacggaaacccattgttgtatgta 27486893  T
Q  263 tgtgttgaaaa--------------------taaagacttgtttgtaaatagaatgctcaagtttctgaatttcaaatgcttttggttgtgaatgatt 340  Q
    |||||||||||                     |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  27486892 tgtgttgaaaagagaagcttgatctaaaaatgaaagacttgtttgtaaatagaaggctcaactttctgaatttcaaatgcttttggttgtgagtgatt 27486795  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 27469469 - 27469359
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 262  Q
    ||||||||||||||||| |||||||| || |||| | |||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||    
T  27469469 acgtacactgctagatatccctttggaacgtccacagcttttgaagatgatactcttgatctgatgagacttggtaaacgaaaacccattgttgtatgta 27469370  T
Q  263 tgtgttgaaaa 273  Q
    |||||| ||||    
T  27469369 tgtgtttaaaa 27469359  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 27523534 - 27523635
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgta 262  Q
    ||||||||||||||||| |||||||| || |||| | ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  27523534 acgtacactgctagatagccctttggaacgtccacagcttttgaagatgatgcccttgatctgatgatactacgtaaacgaaaacccattgttgtatgta 27523633  T
Q  263 tg 264  Q
    ||    
T  27523634 tg 27523635  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 27513910 - 27514004
Alignment:
Q  166 tacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatg 260  Q
    |||||||||||||| || |||||||| || | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  27513910 tacactgctagatatccttttggcacgtcaacagcttttgaagatgatacccttgatctgatgatacttggtaaacgaaaacccattgttgtatg 27514004  T

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Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 27526241 - 27526350
Alignment:
Q  161 caacgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatg 260  Q
    |||| |||||||||||||| |||||||| || || | ||||||||||||||||||| ||    |||||||||| ||||||||||||||||||||||||||    
T  27526241 caacatacactgctagatatccctttggaacatcgacaccttttgaagatgatgcccttt---tgatgatactaggtaaacgaaaacccattgttgtatg 27526337  T
Q  261 tatgtgttgaaaa 273  Q
    |||||||||||||    
T  27526338 tatgtgttgaaaa 27526350  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 27476698 - 27476589
Alignment:
Q  161 caacgtacactgctagatacccctttggcacctccaaaccttttgaagatgatg-cctttgatctgatgatacttggtaaacgaaaacccattgttgtat 259  Q
    |||| |||||||||||||| |||||||| || ||||    |||||||||||||| |||||    |||||||||| |||||||| ||||||||||||||||    
T  27476698 caacatacactgctagatatccctttggaacgtccacggtttttgaagatgatgtccttt----tgatgatactaggtaaacggaaacccattgttgtat 27476603  T
Q  260 gtatgtgttgaaaa 273  Q
    ||||||||||||||    
T  27476602 gtatgtgttgaaaa 27476589  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 27473901 - 27473793
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgta-tgt 261  Q
    |||||||| |||||||| |||||||| ||  ||| |  |||||||||||||||| ||    ||||||||||||||||||||||||||||||||||| |||    
T  27473901 acgtacacagctagatatccctttggaacacccacagattttgaagatgatgcccttt---tgatgatacttggtaaacgaaaacccattgttgtattgt 27473805  T
Q  262 atgtgttgaaaa 273  Q
    ||||||| ||||    
T  27473804 atgtgttaaaaa 27473793  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 27479771 - 27479715
Alignment:
Q  281 ttgtttgtaaatagaatgctcaagtttctgaatttcaaatgcttttggttgtgaatg 337  Q
    ||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||    
T  27479771 ttgtttgtaaacagaaggctcaagtttctgactttcaaatggttttggttgtgaatg 27479715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 27466830 - 27466722
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatg-cctttgatctgatgatacttggtaaacgaaaacccattgttgta-tg 260  Q
    ||||||||||||||||| |||||||| ||  ||| |  |||||||||||||| |||||    |||||||||| |||||||| ||||||||||| ||| ||    
T  27466830 acgtacactgctagatatccctttggaacgcccacagattttgaagatgatgaccttt----tgatgatactaggtaaacggaaacccattgtcgtattg 27466735  T
Q  261 tatgtgttgaaaa 273  Q
    |||||||||||||    
T  27466734 tatgtgttgaaaa 27466722  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 27500469 - 27500561
Alignment:
Q  163 acgtacactgctagatacccctttggcacctccaaaccttttgaagatgatg-cctttgatctgatgatacttggtaaacgaaaacccattgttgta 258  Q
    ||||||||||||||||| || ||||| || |||| |  |||||||||||||| |||||    |||||||||| ||||||||||||||||||||||||    
T  27500469 acgtacactgctagatatccttttggtacgtccacagattttgaagatgatgaccttt----tgatgatactaggtaaacgaaaacccattgttgta 27500561  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 27516743 - 27516835
Alignment:
Q  166 tacactgctagatacccctttggcacctccaaaccttttgaagatgatg-cctttgatctgatgatacttggtaaacgaaaacccattgttgtatgt 261  Q
    ||||| |||||||| |||||||| ||  ||| |  |||||||||||||| |||||    |||||||||| |||||||||||||||||||||||||||    
T  27516743 tacacagctagatatccctttggaacgcccacagattttgaagatgatgaccttt----tgatgatactaggtaaacgaaaacccattgttgtatgt 27516835  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 27498418 - 27498329
Alignment:
Q  169 actgctagatacccctttggcacctccaaaccttttgaagatgatgcctttgatctgatgatacttggtaaacgaaaacccattgttgtatgt 261  Q
    ||||||||||| ||||||||||  ||||  ||||||||||| |||| | ||   |||||||||| ||||||||||||||||||| | ||||||    
T  27498418 actgctagatatccctttggcatgtccacgccttttgaagacgatgtcctt---ctgatgatacctggtaaacgaaaacccattttcgtatgt 27498329  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 1754430 - 1754467
Alignment:
Q  224 tgatgatacttggtaaacgaaaacccattgttgtatgt 261  Q
    |||||||||| |||||||||||||||||||||||||||    
T  1754430 tgatgatactaggtaaacgaaaacccattgttgtatgt 1754467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 1754502 - 1754558
Alignment:
Q  284 tttgtaaatagaatgctcaagtttctgaatttcaaatgcttttggttgtgaatgatt 340  Q
    |||||| ||||||  |||||||||||||||||||||||| || |  |||||||||||    
T  1754502 tttgtatatagaagactcaagtttctgaatttcaaatgccttggaatgtgaatgatt 1754558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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