View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_25 (Length: 356)

Name: NF0900_low_25
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_25
NF0900_low_25
[»] chr5 (3 HSPs)
chr5 (164-276)||(35854569-35854681)
chr5 (94-280)||(10521324-10521510)
chr5 (227-276)||(35802504-35802553)
[»] chr4 (6 HSPs)
chr4 (135-281)||(55705903-55706049)
chr4 (168-270)||(54304257-54304359)
chr4 (164-276)||(45876742-45876854)
chr4 (164-270)||(47293489-47293595)
chr4 (170-275)||(45858817-45858922)
chr4 (170-276)||(56208543-56208649)
[»] chr8 (2 HSPs)
chr8 (139-277)||(7972057-7972195)
chr8 (141-270)||(7961689-7961818)
[»] chr2 (1 HSPs)
chr2 (170-270)||(24357488-24357588)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 35854681 - 35854569
Alignment:
Q  164 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 263  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccg 35854582  T
Q  264 gtccaaagcctcc 276  Q
    ||||||| |||||    
T  35854581 gtccaaatcctcc 35854569  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 280
Target Start/End: Complemental strand, 10521510 - 10521324
Alignment:
Q  94 catagccaatacctcttgaaagcatgagtagagtaggaccggatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattt 193  Q
    |||| ||||| || ||| |||| ||| |||||| ||||||||||| ||||||||| |||| |  ||| | | |||||||||||||||||||||| |||||    
T  10521510 cataaccaatgccccttaaaagtatgcgtagagaaggaccggatcttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattt 10521411  T
Q  194 tgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatg 280  Q
    ||| |||||||| ||||  ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| |||||||||    
T  10521410 tgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaaatcctcctatg 10521324  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 35802504 - 35802553
Alignment:
Q  227 agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcc 276  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcc 35802553  T

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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 55706049 - 55705903
Alignment:
Q  135 gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaa 234  Q
    |||| |||||||||||||| |  ||| | |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  55706049 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaa 55705950  T
Q  235 ccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgc 281  Q
    ||||||||||||||| |||||| ||||||||||||| ||||| ||||    
T  55705949 ccaaaccatgagatgctgcgtctttaccggtccaaaccctcccatgc 55705903  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 54304359 - 54304257
Alignment:
Q  168 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtcc 267  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 54304260  T
Q  268 aaa 270  Q
    |||    
T  54304259 aaa 54304257  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 45876742 - 45876854
Alignment:
Q  164 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 263  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccg 45876841  T
Q  264 gtccaaagcctcc 276  Q
    ||||||| |||||    
T  45876842 gtccaaaccctcc 45876854  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 47293595 - 47293489
Alignment:
Q  164 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 263  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  ||||  ||||||||||||||||||||||||||||||  ||||||||||| |    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactg 47293496  T
Q  264 gtccaaa 270  Q
    |||||||    
T  47293495 gtccaaa 47293489  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q  170 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 269  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  270 agcctc 275  Q
    | ||||    
T  45858917 accctc 45858922  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 56208543 - 56208649
Alignment:
Q  170 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 269  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||  ||| || ||||||||| ||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa 56208642  T
Q  270 agcctcc 276  Q
    | |||||    
T  56208643 accctcc 56208649  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 277
Target Start/End: Original strand, 7972057 - 7972195
Alignment:
Q  139 atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 238  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  239 accatgagatgttgcgtccttaccggtccaaagcctcct 277  Q
    ||||| ||||  ||| || ||||||||||||| ||||||    
T  7972157 accattagatactgcatctttaccggtccaaatcctcct 7972195  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 7961689 - 7961818
Alignment:
Q  141 gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaac 240  Q
    |||| ||||||||||  ||| | | |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| ||||||     
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat 7961788  T
Q  241 catgagatgttgcgtccttaccggtccaaa 270  Q
    ||| |||| |||| || ||||| |||||||    
T  7961789 cattagatattgcatctttaccagtccaaa 7961818  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q  170 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 269  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||||| |||| ||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  270 a 270  Q
    |    
T  24357488 a 24357488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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