View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_3 (Length: 556)
Name: NF0900_low_3
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 4181433 - 4180900
Alignment:
| Q |
1 |
atatgtcataagttgtttccatatactcccccaaacagtctcggaaatatttatgccggtatatgcactcaaataaactaatccaaacatccataattgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4181433 |
atatgtcataagttgtttccatatactcccccaaacagtctcgtaaatatttattccggtatatgcactcaaataaactaatccaaacatccctaattgt |
4181334 |
T |
|
| Q |
101 |
actttctatttggaactgcttttattatctttctagttctttgtttactgtttttcttttgggattagccaggaatgttatttcagtatgaagcggagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4181333 |
actttctatttggaactgcttttattatctttctagttctttatttactgtttttcttttgggattagccaggaatgttatttcagtatgaagcggagct |
4181234 |
T |
|
| Q |
201 |
tgatgctttccttgagtttcttatttggaggttctcaatttgggtggataaaccaactcccggtattgctctcacgaatctgaggtatagagatgagcgc |
300 |
Q |
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| T |
4181233 |
tgatgctttccttgagtttcttatttggaggttctcaatttgggtggataaaccaactcccggtattgctctcatgaatctgaggtatagagatgagcgc |
4181134 |
T |
|
| Q |
301 |
gcagttgagtcaagggataaaggtaggaaactcagaatcttatatgtttgttgtactaggtagcaaagatgcctttcagagttgcgagatggttctcaat |
400 |
Q |
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| T |
4181133 |
gcagttgagtcaagggacaaaggtaggaaactcagaatcttatatgtttgttgtactaggtagctaagatgcctttcagagttgcgagatggttctcaat |
4181034 |
T |
|
| Q |
401 |
tatatttgcttatttgataaaatgcaaagactaaccactgagaatgaattccctgtatcaccctatctgttattgtaattaccaccatgatgagtgccta |
500 |
Q |
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| T |
4181033 |
tatattttcttatttgataaaatgcaaagactaaccactgagaatgaattccctgtatcaccctatctgttattgtaattaccaccatgatgagtgccta |
4180934 |
T |
|
| Q |
501 |
ggcagtaggccctaaaacaagtgtaattgatgat |
534 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
4180933 |
ggcagtaggccctaaaacaagtggaattgatgat |
4180900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 351
Target Start/End: Original strand, 35536311 - 35536597
Alignment:
| Q |
59 |
gtatatgcactcaaataaactaatccaaacatccataattgtactttctatttggaactgcttttattatctttctagttctttgttta---ctgttttt |
155 |
Q |
| |
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|||||| ||||||||||| | ||||||||| | |||||| ||| || |||||||||||||| ||||||| |||||||| |||| | ||||| |
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| T |
35536311 |
gtatatacactcaaataagccaatccaaactgacctaattgcactatcattttggaactgctttctacatctttcaagttctttatttaaagtttttttt |
35536410 |
T |
|
| Q |
156 |
cttttgggattagccaggaatgttatttcagtatgaagcggagcttgatgctttccttgagtttcttatttggaggttctcaatttgggtggataaacca |
255 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
35536411 |
cttttgggattatccaggaatgttatttcagtatgtagctgagcttgatgctttccttaagtttcttatttggaggttctcaattt---tggataaacca |
35536507 |
T |
|
| Q |
256 |
actcccggtattgctctcacgaatctgaggtatagagatgagcgcgcagttgagtcaagggataaaggtaggaaactcagaatcttatatgtttgt |
351 |
Q |
| |
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||||| || |||||| ||||||| |||||||||| ||| ||| || | ||||| |||| ||||||||| | ||||||||| ||||||| |
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| T |
35536508 |
actcctggcattgct------aatctgaagtatagagataagcctgcacttcaatcaagagatagaggtaggaaggtttgaatcttatctgtttgt |
35536597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 4549546 - 4549462
Alignment:
| Q |
3 |
atgtcataagttgtttccatatactcccccaaacagtctcggaaatatttatgccggtatatgcactcaaataaactaatccaaa |
87 |
Q |
| |
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||||||||||||||||| ||| ||| ||||||||||||| ||||| ||||||| ||| || ||||||||| | |||||||| |
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| T |
4549546 |
atgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa |
4549462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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