View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_37 (Length: 312)
Name: NF0900_low_37
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 33790964 - 33791189
Alignment:
| Q |
11 |
gcaatggatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaac |
110 |
Q |
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| T |
33790964 |
gcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaac |
33791063 |
T |
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| Q |
111 |
agtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggatta |
210 |
Q |
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| T |
33791064 |
agtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggatta |
33791163 |
T |
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| Q |
211 |
gtatcaactgttgatgatgtccatct |
236 |
Q |
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| T |
33791164 |
gtatcaactgttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
96 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
195 |
Q |
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||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
196 |
agacgtgatggatta |
210 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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