View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_40 (Length: 301)
Name: NF0900_low_40
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 29 - 293
Target Start/End: Complemental strand, 12799162 - 12798898
Alignment:
| Q |
29 |
atgtgtgattcttatgattgatcaaaaaa-ttaagtgtagcttaagtaggacactatttaagtaagtaaccattagaagcacaatatcaagctttccaat |
127 |
Q |
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| T |
12799162 |
atgtgtgattcttatgattgatcaaaaaaattaagtgtagcttaagtaggacactatttaagtaagtaaccattagaagcacaatatcaacctttccaat |
12799063 |
T |
|
| Q |
128 |
gcttcctaactaaaattcacccacttcacattccttacataactacctccttcttttattgcatgaacattcattccttttttctaacttgtgatcttca |
227 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12799062 |
gcttcctaactaaaattcacccacttcatattccatacataactacctccttcttttattgcatcaacattcattccttttttctaacttgtgatcttca |
12798963 |
T |
|
| Q |
228 |
ttctttgtttagattacttgcttaattcttaagaaaaaacttgtataattttttaagcttcatctc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12798962 |
ttctttgtttagattacttgcttaattcttaagaaaaaacttgtataat-ttttaagcttcatctc |
12798898 |
T |
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