View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_41 (Length: 297)
Name: NF0900_low_41
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34898388 - 34898613
Alignment:
| Q |
1 |
acaaaaatttctaagaacgacagtttcaaactctaaagatactgaaagtgcaccaagaagtatgccaagccaacatatgagggaacaatcaaatgaaatt |
100 |
Q |
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| T |
34898388 |
acaaaaatttcttagaacgacagtttcaaactctaaagatactgaaagtgcaccaagaagtatgccaagccaacatatgagggaacaatcaaatgaaatt |
34898487 |
T |
|
| Q |
101 |
caagagcaaataaattatgacatccagtgcctctataaaataaggaatggtcagaataaagatcatataatcacagtgaaaaatgttgaactagtatcaa |
200 |
Q |
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| T |
34898488 |
caagagcaaataaattatgacatccaatgcctctataaaataaggaatggtcaaaataaagatcatataatcacagtgaaaaatgttgaactagtatcaa |
34898587 |
T |
|
| Q |
201 |
tagccaagagcaaagataaacataga |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34898588 |
tagccaagagcaaagataaacataga |
34898613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 46115242 - 46115149
Alignment:
| Q |
130 |
cctctataaaataaggaatggtcagaataaagatcatataatcacagtgaaaaatgttgaactagtatcaatagccaagagcaaagataaacat |
223 |
Q |
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| T |
46115242 |
cctctataaaataaggaatgttcaaaataaagatcatacaatcacagtgaaaaatgttgaatcagtatctgtagccaagagcagagataaacat |
46115149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 46115344 - 46115291
Alignment:
| Q |
70 |
ccaacatatgagggaacaatcaaatgaaattcaagagcaaataaattatgacat |
123 |
Q |
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||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46115344 |
ccaacatattagagaacaatcaaatgaaattcaagagcaagtaaattatgacat |
46115291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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