View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_42 (Length: 296)
Name: NF0900_low_42
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 23488295 - 23488483
Alignment:
| Q |
58 |
catcatcgatattcatgcgcggcccatatgtgttgaagattcttgcaacacgtatttctgtgttggaaaagatattagctttttaaattacaaagcaaaa |
157 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
23488295 |
catcatcgatattcatgcgcggcccatatgtgttaaagattcttgcaacacgtatttctgtgttggaaaagatattagcttcttaaattacaaagaaaaa |
23488394 |
T |
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| Q |
158 |
ctt---caggctatatatcatacagagaatgagaggagattaagaggaacagaagaccaggaattacctattccatgttgcctatgata |
243 |
Q |
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||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23488395 |
cttctacaggctatataccatacagagaacgagaggagattaagagacacagaagaccaggaattacctatcccatgttgcctatgata |
23488483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 41269209 - 41269270
Alignment:
| Q |
58 |
catcatcgatattcatgcgcggcccatatgtgttgaagattcttgcaacacgtatttctgtg |
119 |
Q |
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||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||| |
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| T |
41269209 |
catcatcgatattcatgcgtggtccatatgtgttgaagattctggcaatgcgtatttctgtg |
41269270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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