View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_45 (Length: 293)

Name: NF0900_low_45
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_45
NF0900_low_45
[»] chr7 (7 HSPs)
chr7 (50-247)||(25811188-25811385)
chr7 (163-197)||(5034080-5034114)
chr7 (163-193)||(9479278-9479308)
chr7 (54-100)||(25592892-25592938)
chr7 (163-197)||(25685281-25685315)
chr7 (163-196)||(9271137-9271170)
chr7 (157-197)||(28032069-28032109)
[»] chr5 (3 HSPs)
chr5 (163-197)||(39981606-39981640)
chr5 (163-197)||(40417445-40417479)
chr5 (163-196)||(6391545-6391578)
[»] chr8 (2 HSPs)
chr8 (163-194)||(9617289-9617320)
chr8 (163-197)||(40691153-40691187)
[»] chr1 (5 HSPs)
chr1 (162-197)||(6135984-6136019)
chr1 (163-194)||(51370202-51370233)
chr1 (163-197)||(2759000-2759034)
chr1 (163-197)||(4362185-4362219)
chr1 (50-98)||(17775124-17775172)
[»] chr4 (2 HSPs)
chr4 (163-197)||(6893110-6893144)
chr4 (163-197)||(34510371-34510405)
[»] chr3 (2 HSPs)
chr3 (162-196)||(20601567-20601601)
chr3 (163-195)||(29697473-29697505)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 25811188 - 25811385
Alignment:
Q  50 gaagcaaagggaatcacaattgaggaaactcaaccgacctcgaataatttcagctttcgtaaaaagttgcaatagtttatttgtcccttagtctattttt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25811188 gaagcaaagggaatcacaattgaggaaactcaaccgacctcgaataatttcagctttcgtaaaaagttgcaatagtttatttgtcccttagtctattttt 25811287  T
Q  150 aaacactgaacaaattgcttatttaaatatgttcatatgaaataggctaacatatcatatcatactttcaaaaagctagactcatgcctatgatacta 247  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25811288 aaacacggaacaaattgcttatttaaatatgttcatatgaaataggctaacatatcatatcatactttcaaaaagctagactcatgcctatgatacta 25811385  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 5034114 - 5034080
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||||||||||||||||||||||||    
T  5034114 attgcttatttaaatatgttcatatgaaataggct 5034080  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 9479308 - 9479278
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaata 193  Q
    |||||||||||||||||||||||||||||||    
T  9479308 attgcttatttaaatatgttcatatgaaata 9479278  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 25592892 - 25592938
Alignment:
Q  54 caaagggaatcacaattgaggaaactcaaccgacctcgaataatttc 100  Q
    |||| ||||||||||||||||||||| |||||||| ||| |||||||    
T  25592892 caaaaggaatcacaattgaggaaacttaaccgaccccgactaatttc 25592938  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 25685315 - 25685281
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    ||||||||||||||||| |||||||||||||||||    
T  25685315 attgcttatttaaatatattcatatgaaataggct 25685281  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 9271170 - 9271137
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggc 196  Q
    |||||||||||||| |||||||||||||||||||    
T  9271170 attgcttatttaaagatgttcatatgaaataggc 9271137  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 28032069 - 28032109
Alignment:
Q  157 gaacaaattgcttatttaaatatgttcatatgaaataggct 197  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  28032069 gaacacattgcttatttaaagatgttcacatgaaataggct 28032109  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 39981640 - 39981606
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||||||||||||||||||||||||    
T  39981640 attgcttatttaaatatgttcatatgaaataggct 39981606  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 40417445 - 40417479
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  40417445 attgcttatttaaagatgttcatatgaaataggct 40417479  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 6391545 - 6391578
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggc 196  Q
    |||||||||||||| |||||||||||||||||||    
T  6391545 attgcttatttaaagatgttcatatgaaataggc 6391578  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 9617320 - 9617289
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaatag 194  Q
    ||||||||||||||||||||||||||||||||    
T  9617320 attgcttatttaaatatgttcatatgaaatag 9617289  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 40691187 - 40691153
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  40691187 attgcttatttaaagatgttcatatgaaataggct 40691153  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 6136019 - 6135984
Alignment:
Q  162 aattgcttatttaaatatgttcatatgaaataggct 197  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6136019 aattgcttatttaaagatgttcatatgaaataggct 6135984  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 51370233 - 51370202
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaatag 194  Q
    ||||||||||||||||||||||||||||||||    
T  51370233 attgcttatttaaatatgttcatatgaaatag 51370202  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 2759034 - 2759000
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||| ||||||||||||||||||||||||||||||    
T  2759034 attgtttatttaaatatgttcatatgaaataggct 2759000  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 4362219 - 4362185
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  4362219 attgcttatttaaaaatgttcatatgaaataggct 4362185  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 17775172 - 17775124
Alignment:
Q  50 gaagcaaagggaatcacaattgaggaaactcaaccgacctcgaataatt 98  Q
    |||||||| ||||||||||||||||||||||| | ||||| || |||||    
T  17775172 gaagcaaatggaatcacaattgaggaaactcagctgaccttgactaatt 17775124  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 6893110 - 6893144
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  6893110 attgcttatttaaaaatgttcatatgaaataggct 6893144  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 34510405 - 34510371
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaataggct 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  34510405 attgcttatttaaagatgttcatatgaaataggct 34510371  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 20601601 - 20601567
Alignment:
Q  162 aattgcttatttaaatatgttcatatgaaataggc 196  Q
    ||||||||||||||| |||||||||||||||||||    
T  20601601 aattgcttatttaaagatgttcatatgaaataggc 20601567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 29697505 - 29697473
Alignment:
Q  163 attgcttatttaaatatgttcatatgaaatagg 195  Q
    |||||||||||||| ||||||||||||||||||    
T  29697505 attgcttatttaaagatgttcatatgaaatagg 29697473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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