View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_5 (Length: 525)
Name: NF0900_low_5
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 390
Target Start/End: Complemental strand, 35791559 - 35791195
Alignment:
| Q |
21 |
aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791559 |
aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctaca |
35791460 |
T |
|
| Q |
121 |
tggagaaacacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatag |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791459 |
tggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatag |
35791360 |
T |
|
| Q |
221 |
caatagctaatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaagagt-ttttgctcacggcctaccaaagcgttatgttatttta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35791359 |
caatagctaatagtctaatcatgtctaatatgacaagtattccaagataacgaataaagagttttttgctcacggcctaccaaagcgttatgttatttta |
35791260 |
T |
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| Q |
320 |
ctcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaata |
390 |
Q |
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| T |
35791259 |
ctcttgagatcctatgcattgtcaatgcaatatactactaata------tcttattaatgtaggttcaata |
35791195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 129 - 279
Target Start/End: Complemental strand, 35782191 - 35782045
Alignment:
| Q |
129 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
228 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
35782191 |
cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact |
35782095 |
T |
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| Q |
229 |
aatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaag |
279 |
Q |
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|||||||| |||||||| |||||| |||||||| ||||||||||||||||| |
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| T |
35782094 |
aatagtctgatcatgtc-aatatggcaagtattacaagataacgaataaag |
35782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 311 - 496
Target Start/End: Complemental strand, 35781013 - 35780832
Alignment:
| Q |
311 |
gttattttactcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaatatgtcatttcacataaa---- |
406 |
Q |
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|||||||||||||| | ||||||| |||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
35781013 |
gttattttactcttcatatcctatccattgtgaatgcaatatactagtaata------tcttattaatgtaggttcaatatgtcatttcacataaacttg |
35780920 |
T |
|
| Q |
407 |
-----attggcaaaaataaggaaaagatatcaataatgcttaagaagacaatgtgaatctataatatactataccaaaattgagtaatggaatgt |
496 |
Q |
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| T |
35780919 |
caaaaattggcaaaaataagaaaaagatatcaataatgtttaagaagacaatgtg-------aatatactataccaaaattgagtaatggaatgt |
35780832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 35782276 - 35782183
Alignment:
| Q |
21 |
aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctt |
114 |
Q |
| |
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|||| ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35782276 |
aataccaaaggcttacgtttgcaacatttagaggagcaggtcatgcagttccatgtttcaaaccaagcaactcacttgtgtttttcacctcctt |
35782183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 35785071 - 35784976
Alignment:
| Q |
129 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
228 |
Q |
| |
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||||||||||||||||||||| |||||||| |||| ||||||| ||||||||| ||||| | ||||||||||| ||||||||||| |||||||| |
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| T |
35785071 |
cacctccttctacaaaataat------tcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagct |
35784978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 3334973 - 3335090
Alignment:
| Q |
21 |
aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctaca |
120 |
Q |
| |
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||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| || |||||| ||||||| | |
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| T |
3334973 |
aatatgaaggacttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcacttaaattcttcaccacctttcttct |
3335072 |
T |
|
| Q |
121 |
tggagaaacacctccttc |
138 |
Q |
| |
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||||||| |||| ||||| |
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| T |
3335073 |
tggagaatcaccaccttc |
3335090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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