View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0900_low_50 (Length: 286)
Name: NF0900_low_50
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_50 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 44703955 - 44704152
Alignment:
| Q |
42 |
tagcataggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagc |
141 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44703955 |
tagcaaaggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagc |
44704054 |
T |
|
| Q |
142 |
tacgttttccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactg |
239 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44704055 |
tacgttttccttcattccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactg |
44704152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 44714666 - 44714855
Alignment:
| Q |
50 |
gcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgtttt |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| || |||||| || |||||| |||||||||||||| |||| ||||||||| || ||| |
|
|
| T |
44714666 |
gcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagccacaattt |
44714765 |
T |
|
| Q |
150 |
ccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactg |
239 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44714766 |
ccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctgggttatcgtacacctccactg |
44714855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 2278213 - 2278155
Alignment:
| Q |
83 |
aacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagc |
141 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
2278213 |
aacacttctttcccaagcataacactagtggtggggtccactttacgacgaatctcagc |
2278155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 484 times since January 2019
Visitors: 6696