View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_52 (Length: 282)
Name: NF0900_low_52
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_52 |
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| [»] scaffold0939 (1 HSPs) |
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Alignment Details
Target: scaffold0939 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0939
Description:
Target: scaffold0939; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 688 - 534
Alignment:
| Q |
84 |
ggtccataatggatataattctgacatctttatgacatttttaatacataatannnnnnnn-ataaggcaagaacgaggttaggcatcaaggagtccaga |
182 |
Q |
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| T |
688 |
ggtccataatggatataattctgacatctttatgacatttttaatacataatatttttttttataaggcaagaatcaggttaggcatcaaggagtccaga |
589 |
T |
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| Q |
183 |
agcatcccaactaggttcgcacccaccaaaaatcccatcatctaccgcctactcc |
237 |
Q |
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| T |
588 |
agcatcccaactacgttcgcgcccaccgaaaatcccatcatctactgtctactcc |
534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 7324415 - 7324321
Alignment:
| Q |
145 |
ataaggcaagaacgaggttaggcatcaaggagt-ccagaagcatcccaactaggttcgca-cccaccaaaaatcccatcatctaccgcctactcc |
237 |
Q |
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| T |
7324415 |
ataaggcaaaaagtaggttaggcatcaaggagtgccagaaacatcccaactaggttggcatccaactagagctcccatcctctaccgcctactcc |
7324321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 12130110 - 12130049
Alignment:
| Q |
145 |
ataaggcaagaacgaggttaggcatcaaggagtccagaagcatcccaactaggttcgcaccc |
206 |
Q |
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| T |
12130110 |
ataaggcaagaagaaggttagacatcaaggagcccagagacatcccaactaggttagcaccc |
12130049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 8612632 - 8612687
Alignment:
| Q |
145 |
ataaggcaagaacgaggttaggcatcaaggag-tccagaagcatcccaactaggtt |
199 |
Q |
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| T |
8612632 |
ataaggcaagaagtaggttaggcatcaaggagcgccagaaacatcccaactaggtt |
8612687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 45396934 - 45396996
Alignment:
| Q |
145 |
ataaggcaagaacgaggttaggcatcaaggagtccagaagcatcccaactaggttcgcaccca |
207 |
Q |
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|||| ||||||| |||||||||||||||||| |||||| |||||||||||||| ||||||| |
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| T |
45396934 |
ataaagcaagaaataggttaggcatcaaggaggccagaaatatcccaactaggttggcaccca |
45396996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 24519952 - 24519891
Alignment:
| Q |
145 |
ataaggcaagaacgaggttaggcatcaaggagtccagaagcatcccaactaggttcgcaccc |
206 |
Q |
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| T |
24519952 |
ataaggcaaggagaaggttagacatcaaggagcccagagacatcccaactaggttggcaccc |
24519891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 22021297 - 22021349
Alignment:
| Q |
181 |
gaagcatcccaactaggttcgcacccaccaa-aaatcccatcatctaccgcct |
232 |
Q |
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| T |
22021297 |
gaagcatcccaactaggttggcacccaacaataactcccatcctctaccgcct |
22021349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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