View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_56 (Length: 278)
Name: NF0900_low_56
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 35820364 - 35820185
Alignment:
| Q |
57 |
cttccactttcacaaaatcaataaaccctttattgttgttggtcttcttgttttgtaaacaatttttcgacattacttcgaaaagattttcccttctttg |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820364 |
cttccactttcacaaaatcaataaaccctttattgttgttggtcttcttgttttgtaaacaatttttcgacattacttcgaaaagattttcccttctttg |
35820265 |
T |
|
| Q |
157 |
aacttctctaggatcaatgaataattcaagttcaactctcttggattgtttatgcaaaagatcaacttgctcctttatat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820264 |
aacttctctaggatcaatgaataattcaagttcaactctcttggattgtttatgcaaaagatcaacttgctcctttatat |
35820185 |
T |
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