View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_57 (Length: 275)

Name: NF0900_low_57
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_57
NF0900_low_57
[»] chr1 (3 HSPs)
chr1 (38-224)||(10228900-10229086)
chr1 (59-165)||(28224305-28224411)
chr1 (100-147)||(27567909-27567956)
[»] chr6 (1 HSPs)
chr6 (90-165)||(14217308-14217383)
[»] chr4 (3 HSPs)
chr4 (53-164)||(12105488-12105599)
chr4 (54-165)||(29067684-29067795)
chr4 (100-148)||(4394454-4394502)
[»] chr8 (2 HSPs)
chr8 (75-163)||(39902868-39902956)
chr8 (100-165)||(9824687-9824752)
[»] chr3 (1 HSPs)
chr3 (105-148)||(49723529-49723572)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 10229086 - 10228900
Alignment:
Q  38 aggtagcaatttttagtgtgtgttaacctttcaattcaatgctcaaacgatgaccgtgagcaatacccatatttagtgtttgacatgtctcaaataaaat 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||    
T  10229086 aggtagcaatttttagtgtgtgttaacctttcaattcaatgctcaaacgatgaccgtgagcgatactcatatttagtgtttcacatgcctcaaataaaat 10228987  T
Q  138 tacacatttaagatttttaatatttatgnnnnnnnngtcaacatatttaaaagacctcaattcaaattagctctaggcatacaaatg 224  Q
    ||||||||||||| ||||||||||||||        ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  10228986 tacacatttaagaattttaatatttatgttttttttgtcaacatatttaaaaggcctcaattcaaatttgctctaggcatacaaatg 10228900  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 28224411 - 28224305
Alignment:
Q  59 gttaacctttcaattcaatgctcaaacgatgaccgtgagcaatacccatatttagtgtttgacatgtctcaaataaaattacacatttaagatttttaat 158  Q
    |||||| ||||| ||||||| ||||||||| ||  | ||  |||| |||||| |||||| |||||||||||||||||||||||||||||||||  |||||    
T  28224411 gttaacatttcagttcaatgttcaaacgataactttaagagatactcatattgagtgttcgacatgtctcaaataaaattacacatttaagatacttaat 28224312  T
Q  159 atttatg 165  Q
     ||||||    
T  28224311 ttttatg 28224305  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 27567956 - 27567909
Alignment:
Q  100 atacccatatttagtgtttgacatgtctcaaataaaattacacattta 147  Q
    ||||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  27567956 atacccatacttagtgttcgacatatctcaaataaacttacacattta 27567909  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 14217308 - 14217383
Alignment:
Q  90 accgtgagcaatacccatatttagtgtttgacatgtctcaaataaaattacacatttaagatttttaatatttatg 165  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  14217308 accgtgagcgatacccatatttagtatttgacatgcctcaaataaaattacacatttaagattcttaatatctatg 14217383  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 12105488 - 12105599
Alignment:
Q  53 gtgtgtgttaacctttcaattcaatgctcaaacgatgaccgtgagcaatacccatatttagtgtttgacatgtctcaaataaaattacacatttaagatt 152  Q
    ||||||||||| |||||| ||||||| | ||||| ||||||| ||  |||||  |||||| |||| |||||| |||||||||||||||||||||||||||    
T  12105488 gtgtgtgttaatctttcagttcaatgtttaaacgttgaccgtaagtgatacctgtatttactgttcgacatgcctcaaataaaattacacatttaagatt 12105587  T
Q  153 tttaatatttat 164  Q
     ||||| |||||    
T  12105588 cttaatttttat 12105599  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 29067795 - 29067684
Alignment:
Q  54 tgtgtgttaacctttcaattcaatgctcaaacgatgaccgtgagcaatacccatatttagtgtttgacatgtctcaaataaaattacacatttaagattt 153  Q
    |||||||||||||| |  ||||||| ||||||| |||| || | | |||  |||||||||||||||||||  |||||||||||  ||||||||||  ||     
T  29067795 tgtgtgttaaccttccgcttcaatgttcaaacgttgacagtaaacgataatcatatttagtgtttgacatacctcaaataaaaccacacatttaaagttc 29067696  T
Q  154 ttaatatttatg 165  Q
    ||||| ||||||    
T  29067695 ttaatttttatg 29067684  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 4394454 - 4394502
Alignment:
Q  100 atacccatatttagtgtttgacatgtctcaaataaaattacacatttaa 148  Q
    |||| |||||||| ||||| |||||||||||| ||||||||||||||||    
T  4394454 atactcatatttaatgtttaacatgtctcaaacaaaattacacatttaa 4394502  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 39902956 - 39902868
Alignment:
Q  75 aatgctcaaacgatgaccgtgagcaatacccatatttagtgtttgacatgtctcaaataaaattacacatttaagatttttaatattta 163  Q
    |||| ||||| | ||| ||||||  ||||| ||| |||||||| |||||| |||||||||||||||| ||||| |||| ||||| ||||    
T  39902956 aatgttcaaatgctgatcgtgagtgataccaataattagtgttcgacatgcctcaaataaaattacatatttatgattcttaattttta 39902868  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 9824752 - 9824687
Alignment:
Q  100 atacccatatttagtgtttgacatgtctcaaataaaattacacatttaagatttttaatatttatg 165  Q
    ||||| ||||||||||||||||||  |||||||| ||||||| |||||   |||||||| ||||||    
T  9824752 atacctatatttagtgtttgacatacctcaaatataattacagatttatagtttttaatttttatg 9824687  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 49723529 - 49723572
Alignment:
Q  105 catatttagtgtttgacatgtctcaaataaaattacacatttaa 148  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||    
T  49723529 catatttagtgtatgacatgtctcacataaaattacatatttaa 49723572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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