View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_61 (Length: 269)
Name: NF0900_low_61
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 10151145 - 10151388
Alignment:
| Q |
16 |
attgtaggatagacacttctgatggaaggtgtgtctggtctctaacatgtgtcagtgtcagacacctaacattcactgtttaacttctttgttttgaatg |
115 |
Q |
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| T |
10151145 |
attgtaggatagacacttctgatggaaggtgtgtctggtctctaacatgtgtcagtgtctgacacctaacattcactgtttaacttctttgttttgaatg |
10151244 |
T |
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| Q |
116 |
cagacaatggcatggatactagatgagtattcaaaatttcatggccattctcctgcagtagtgactggaaaacctatagtaagtaaattaagttgtttat |
215 |
Q |
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| T |
10151245 |
cagacaatggcatggatactagatgagtattcaaaatttcatggtcattctcctgcagtagtgactggaaaacctatagtaagtaaattaatttgtttat |
10151344 |
T |
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| Q |
216 |
aattttcattttaatcagtgttaataaaccaaattcatttctaa |
259 |
Q |
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| T |
10151345 |
aattttcattttaatcagtgttaataaaccaaattcatttctaa |
10151388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 33197170 - 33197261
Alignment:
| Q |
110 |
tgaatgcagacaatggcatggatactagatgagtattcaaaatttcatggccattctcctgcagtagtgactggaaaacctatagtaagtaa |
201 |
Q |
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| T |
33197170 |
tgaatgcagaccatggcatggatactagatgaatattccaaatttcacggctactcgcccgcagtggtgactggaaaacctatagtaagtaa |
33197261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 41211373 - 41211456
Alignment:
| Q |
117 |
agacaatggcatggatactagatgagtattcaaaatttcatggccattctcctgcagtagtgactggaaaacctatagtaagta |
200 |
Q |
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| T |
41211373 |
agaccatggcatggattctagatgagtattctaaatttcatggacattcgcctgctgttgtgaccggaaagcctattgtaagta |
41211456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 4273691 - 4273608
Alignment:
| Q |
116 |
cagacaatggcatggatactagatgagtattcaaaatttcatggccattctcctgcagtagtgactggaaaacctatagtaagt |
199 |
Q |
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| T |
4273691 |
cagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt |
4273608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 27219891 - 27219851
Alignment:
| Q |
28 |
acacttctgatggaaggtgtgtctggtctctaacatgtgtc |
68 |
Q |
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| T |
27219891 |
acacttctgatcgaaggtgtgtctggtgtctaacatgtgtc |
27219851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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