View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_64 (Length: 267)

Name: NF0900_low_64
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_64
NF0900_low_64
[»] chr6 (2 HSPs)
chr6 (46-181)||(31233154-31233289)
chr6 (46-148)||(31242329-31242431)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 31233289 - 31233154
Alignment:
Q  46 ctttccaccaaaaaatgatggctaaggggatcaaaacagtgcaagactttcttaaattagcagttattgatactccaaagctaagagaggtatctatttt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31233289 ctttccaccaaaaaatgatggctaaggggatcaaaacagtgcaagactttcttaaattagcagttattgatactccaaagctaagagaggtatctatttt 31233190  T
Q  146 tatgctaatttagttcataaaaaagtcttttacttc 181  Q
    ||||||||||||||||||||||||||||||||||||    
T  31233189 tatgctaatttagttcataaaaaagtcttttacttc 31233154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 31242431 - 31242329
Alignment:
Q  46 ctttccaccaaaaaatgatggctaaggggatcaaaacagtgcaagactttcttaaattagcagttattgatactccaaagctaagagaggtatctatttt 145  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  31242431 ctttccaccacaaaatgatggctaaggggatcaaaacggtgcaagactttcttaaattagcagttattgatactccaaagctaagagaggtatatatctt 31242332  T
Q  146 tat 148  Q
    |||    
T  31242331 tat 31242329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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