View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_72 (Length: 264)
Name: NF0900_low_72
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 38767660 - 38767881
Alignment:
| Q |
11 |
caaaggatacaaacagagagaagcatcacgtcttgcagaccttctagccttcagaaaggttgtgtgtgtctatacatatatatat--------------t |
96 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
38767660 |
caaaggatacacacagagagaagcatcacgtcttgcagaccttctagccttcagaaaggttgtgtgtgtctatatatatatatatatatatatatatatt |
38767759 |
T |
|
| Q |
97 |
ctcttgcatgtactagctagtaatgttagggaccaatttctgaaccttctccttaacacaccattaggtcaaagcaaggctagggggacgtgttagacta |
196 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38767760 |
ctcttgcatgtactag----taatgttagggaccaatttctgaaccttctccttaacacaccattaggtcaaagcaaggctaggtggacgtgttagacta |
38767855 |
T |
|
| Q |
197 |
ataatatctggaggtgcagccttaag |
222 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
38767856 |
ataatatctggaggtgcagccttaag |
38767881 |
T |
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