View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_73 (Length: 262)

Name: NF0900_low_73
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_73
NF0900_low_73
[»] chr1 (4 HSPs)
chr1 (36-176)||(50953531-50953671)
chr1 (36-173)||(23722360-23722497)
chr1 (36-173)||(23948771-23948908)
chr1 (36-173)||(5307789-5307926)
[»] chr8 (1 HSPs)
chr8 (36-176)||(26617713-26617853)
[»] chr4 (1 HSPs)
chr4 (36-176)||(34390793-34390933)
[»] chr3 (2 HSPs)
chr3 (36-173)||(54345808-54345945)
chr3 (36-176)||(27157155-27157295)
[»] chr2 (2 HSPs)
chr2 (36-171)||(7306070-7306205)
chr2 (36-176)||(40197375-40197515)
[»] chr7 (2 HSPs)
chr7 (36-173)||(8020732-8020869)
chr7 (57-176)||(25712539-25712658)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 50953531 - 50953671
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  50953531 catcatcatcattagggatcagaagcgcaagaatttgattaacagtgtcagctgtcaagttatttatgaggaaattaatgttccaatcttcaaaaggact 50953630  T
Q  136 aagaacctccataactgatagagttgtatccatgtaggcct 176  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  50953631 aagaacatccctaactgatagagttgtatccatgtaggcct 50953671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 23722497 - 23722360
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||    
T  23722497 catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgagaaaatcaatgttccaatctccagaaggact 23722398  T
Q  136 aagaacctccataactgatagagttgtatccatgtagg 173  Q
    |||||| ||| | || ||||||||| ||||||||||||    
T  23722397 aagaacatcccttaccgatagagttatatccatgtagg 23722360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 23948908 - 23948771
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||| |||||||    
T  23948908 catcatcatcattagggattgaaagcgcaagaatttgattaacagtgttagttggcaagttatttatgaggaaatcaatgttccaatctccagaaggact 23948809  T
Q  136 aagaacctccataactgatagagttgtatccatgtagg 173  Q
    |||||| ||| |||| ||||||||| ||||||||||||    
T  23948808 aagaacatccctaaccgatagagttatatccatgtagg 23948771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 5307926 - 5307789
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||| | |||||||    
T  5307926 catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagttggcaagttatttatgcggaaatcaatgttccaatctctagaaggact 5307827  T
Q  136 aagaacctccataactgatagagttgtatccatgtagg 173  Q
    |||||| ||| ||||  |||||||| ||||||||||||    
T  5307826 aagaacatccctaaccaatagagttatatccatgtagg 5307789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 26617713 - 26617853
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||| | |||||||    
T  26617713 catcatcatcattagggatcggaagcgcaagaatttgattaacagtgtcagttggcaagttgtttatgaggaaatcaatgttccaatctctagaaggact 26617812  T
Q  136 aagaacctccataactgatagagttgtatccatgtaggcct 176  Q
    |||||| ||| |||| |||||||||||||||||||||||||    
T  26617813 aagaacatccctaaccgatagagttgtatccatgtaggcct 26617853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 34390793 - 34390933
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||| |||||| || |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  34390793 catcatcatcattagggatcggaagcgtaataatttgattaacggtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact 34390892  T
Q  136 aagaacctccataactgatagagttgtatccatgtaggcct 176  Q
    |||||| ||| |||| |||||||||||||||||||||||||    
T  34390893 aagaacatccctaaccgatagagttgtatccatgtaggcct 34390933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 54345945 - 54345808
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||    
T  54345945 catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagttggcaagttatttatgaggaaatcaatgttccaatctccagaaggact 54345846  T
Q  136 aagaacctccataactgatagagttgtatccatgtagg 173  Q
    |||||| ||| |||| ||||||||| ||||||||||||    
T  54345845 aagaacatccctaaccgatagagttatatccatgtagg 54345808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 27157155 - 27157295
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||| ||  | ||||| ||||||||||||||||||| |||||||||||| ||||    
T  27157155 catcatcatcattaaggatcggaagcgcaagaatttgattaacagtgtcaactagcaagttacttatgaggaaatcaatgtttcaatctccaaaaagact 27157254  T
Q  136 aagaacctccataactgatagagttgtatccatgtaggcct 176  Q
    |||||| ||| |||| |||||||||||||||||||||||||    
T  27157255 aagaacatccctaaccgatagagttgtatccatgtaggcct 27157295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 7306070 - 7306205
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||||||    
T  7306070 catcatcatcattagggatcgaaagtgcaagaatttgattaacagtgtcagctgacaagttgtttatgaggaaatcaatgttccaatctccagaaggact 7306169  T
Q  136 aagaacctccataactgatagagttgtatccatgta 171  Q
    |||||| ||| |||| ||||||||||||||||||||    
T  7306170 aagaacatccctaaccgatagagttgtatccatgta 7306205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 40197375 - 40197515
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| || |  |||||||||||||||| ||||| ||| || ||   |||| || || |||||||||||||||||||||||| |||||||    
T  40197375 catcatcatcattagggaccgaaagcgcaagaatttgactaacattgttagttggaaagttgttcataaggaaatcaatgttccaatctccagaaggact 40197474  T
Q  136 aagaacctccataactgatagagttgtatccatgtaggcct 176  Q
    |||||| ||| |||| |||| ||||||||||||||||||||    
T  40197475 aagaacatccctaaccgatatagttgtatccatgtaggcct 40197515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 8020732 - 8020869
Alignment:
Q  36 catcatcatcattagagatcagaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggact 135  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||| |||||||    
T  8020732 catcatcatcattagggattgaaagcgcaagaatttgattaacagtgttagttggcaagttatttatgaggaaatcaatgttccaatctccagaaggact 8020831  T
Q  136 aagaacctccataactgatagagttgtatccatgtagg 173  Q
    |||||| ||| |||| ||||||||| ||||||||||||    
T  8020832 aagaacatccctaaccgatagagttatatccatgtagg 8020869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 25712658 - 25712539
Alignment:
Q  57 gaagcgcaagaatttgattaacagtgtcagctgtcgagttatttatgaggaaatcaatgttccaatctccaaaaggactaagaacctccataactgatag 156  Q
    ||||| ||||||| ||| |||||||||| | || | |||| || || ||||||||| |||||||||||||| ||||| ||||||| ||| ||||  ||||    
T  25712658 gaagcacaagaatctgactaacagtgtctgttggcaagttgttcataaggaaatcagtgttccaatctccagaaggattaagaacatccctaaccaatag 25712559  T
Q  157 agttgtatccatgtaggcct 176  Q
    | |||||||||  |||||||    
T  25712558 aattgtatccacataggcct 25712539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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