View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_76 (Length: 259)
Name: NF0900_low_76
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 34053109 - 34052961
Alignment:
| Q |
30 |
cttgcaaccaaagttgcgaaaaacagaagctgttctgacataggaagtaccaatggaccaagtgttgtgatgttggttttgagtgcttctccggcgaccg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
34053109 |
cttgcaaccaaagttgcgaaaaacagaagctgttctgacataggaagtaccaatggaccaagtgttgtgatgttggttttcagtgcttctccggcaaccg |
34053010 |
T |
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| Q |
130 |
ccattaaatcttttgagagtgatacaccaattgatttcttctcatcttc |
178 |
Q |
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| T |
34053009 |
ccattaaatcttttgagagtgatacaccaattgatttcttctcatcttc |
34052961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 15239383 - 15239283
Alignment:
| Q |
57 |
agctgttctgacataggaagtaccaatggaccaagtgttgtgatgttggttttgagtgcttctccggcgaccgccattaaatcttttgagagtgatacac |
156 |
Q |
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|||||||| |||||||| || || ||||| || | |||||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||| |
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| T |
15239383 |
agctgttccgacataggtaggactaatggtcctaatgttgtgatgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacac |
15239284 |
T |
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| Q |
157 |
c |
157 |
Q |
| |
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| |
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| T |
15239283 |
c |
15239283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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