View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_77 (Length: 257)
Name: NF0900_low_77
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 48450334 - 48450583
Alignment:
| Q |
1 |
ttgtctttgttttagtgtggagtttccaattgttgatttagttattgcatagaagtgctattagaagtttgttataagttagttttaactgcatccactt |
100 |
Q |
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| T |
48450334 |
ttgtctttgttttagtgtggagtttccaattgttgatttagttattgcatagaagtgctattagaagtttgttataagttagttttaactgcatccactt |
48450433 |
T |
|
| Q |
101 |
ttgttagttagtcacaaattgggtgtaggagaaatggttgtaggaagcatgatgaaaacaacatgacacttttataactgtatacacttctggcactttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48450434 |
ttgttagttagtcacaaattgggtgtaggagaaatggttgtaggaagcatgatgaaaacaacatgacacttttataaccgtatacacttctggcactttt |
48450533 |
T |
|
| Q |
201 |
ttcaaactagcaggccttgatttcattttaattttatattgtctctgctc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450534 |
ttcaaactagcaggccttgatttcattttaattttatattgtctctgctc |
48450583 |
T |
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