View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_low_87 (Length: 239)
Name: NF0900_low_87
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_low_87 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 52925884 - 52926103
Alignment:
| Q |
20 |
tatatgtttgttgagaaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925884 |
tatatgtttgttgagaaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtc |
52925983 |
T |
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| Q |
120 |
atttgactcaatcttaaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925984 |
atttgactcaatcttaaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacat |
52926083 |
T |
|
| Q |
220 |
catcagcatttactctggtg |
239 |
Q |
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|||||||||||||||||||| |
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| T |
52926084 |
catcagcatttactctggtg |
52926103 |
T |
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