View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_9 (Length: 504)

Name: NF0900_low_9
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_9
NF0900_low_9
[»] chr6 (15 HSPs)
chr6 (118-499)||(2398030-2398413)
chr6 (92-208)||(6770828-6770946)
chr6 (69-216)||(32800176-32800325)
chr6 (109-215)||(20208007-20208113)
chr6 (109-215)||(22102030-22102136)
chr6 (122-208)||(28048742-28048828)
chr6 (30-116)||(2397682-2397768)
chr6 (94-211)||(10008190-10008307)
chr6 (129-202)||(2613359-2613432)
chr6 (98-167)||(22552229-22552298)
chr6 (94-213)||(9213040-9213160)
chr6 (86-150)||(16969637-16969701)
chr6 (95-208)||(5611130-5611244)
chr6 (129-215)||(31490385-31490471)
chr6 (140-208)||(17834977-17835045)
[»] chr5 (22 HSPs)
chr5 (91-214)||(6102823-6102946)
chr5 (95-199)||(16802026-16802130)
chr5 (101-208)||(12036309-12036416)
chr5 (69-235)||(14152445-14152613)
chr5 (105-204)||(20527011-20527111)
chr5 (138-217)||(35290679-35290758)
chr5 (94-231)||(3600108-3600246)
chr5 (91-213)||(6830262-6830385)
chr5 (141-209)||(2033499-2033567)
chr5 (95-213)||(15139166-15139281)
chr5 (69-199)||(39034461-39034592)
chr5 (91-208)||(30840599-30840716)
chr5 (119-188)||(5471101-5471170)
chr5 (129-208)||(2611149-2611229)
chr5 (128-208)||(30293824-30293904)
chr5 (144-214)||(29552373-29552443)
chr5 (162-216)||(35349387-35349441)
chr5 (129-186)||(5002920-5002977)
chr5 (140-243)||(9114930-9115032)
chr5 (155-216)||(35626647-35626708)
chr5 (95-176)||(28511182-28511265)
chr5 (167-238)||(34346953-34347025)
[»] scaffold0299 (1 HSPs)
scaffold0299 (92-220)||(18005-18135)
[»] chr2 (17 HSPs)
chr2 (69-238)||(1870464-1870634)
chr2 (96-214)||(34501589-34501707)
chr2 (123-238)||(33635540-33635655)
chr2 (95-213)||(13835835-13835953)
chr2 (119-214)||(5444487-5444582)
chr2 (88-185)||(43131783-43131881)
chr2 (141-213)||(29525652-29525724)
chr2 (99-243)||(40346710-40346856)
chr2 (93-208)||(23453340-23453457)
chr2 (87-211)||(27896453-27896578)
chr2 (110-215)||(13618193-13618290)
chr2 (129-217)||(38193671-38193759)
chr2 (95-208)||(13738396-13738510)
chr2 (165-215)||(30905411-30905461)
chr2 (128-217)||(18717882-18717971)
chr2 (92-208)||(40574144-40574261)
chr2 (129-209)||(4623730-4623810)
[»] chr7 (25 HSPs)
chr7 (92-238)||(24937827-24937974)
chr7 (94-238)||(8656291-8656439)
chr7 (91-216)||(39786445-39786571)
chr7 (94-207)||(47537423-47537536)
chr7 (122-213)||(40721412-40721504)
chr7 (94-208)||(21857601-21857715)
chr7 (128-243)||(12810112-12810228)
chr7 (141-199)||(25780245-25780303)
chr7 (152-214)||(27915189-27915251)
chr7 (97-238)||(37532524-37532668)
chr7 (138-214)||(1112147-1112223)
chr7 (93-217)||(30095316-30095441)
chr7 (97-176)||(32279688-32279767)
chr7 (122-185)||(46300699-46300762)
chr7 (129-214)||(22555738-22555823)
chr7 (129-184)||(44845840-44845894)
chr7 (92-185)||(16979937-16980031)
chr7 (138-208)||(19677037-19677107)
chr7 (142-235)||(39386951-39387045)
chr7 (161-214)||(28664542-28664595)
chr7 (140-208)||(47445357-47445425)
chr7 (140-210)||(5871239-5871308)
chr7 (129-211)||(11740359-11740441)
chr7 (138-215)||(8896592-8896669)
chr7 (128-185)||(34993152-34993209)
[»] chr3 (19 HSPs)
chr3 (69-216)||(34228251-34228398)
chr3 (100-213)||(48252267-48252380)
chr3 (138-216)||(41287876-41287954)
chr3 (95-216)||(4020096-4020218)
chr3 (94-186)||(45408692-45408784)
chr3 (88-147)||(28940566-28940624)
chr3 (145-214)||(19202180-19202249)
chr3 (92-238)||(635675-635823)
chr3 (97-199)||(2127363-2127461)
chr3 (95-208)||(29032410-29032524)
chr3 (129-208)||(44291231-44291310)
chr3 (146-216)||(25958052-25958122)
chr3 (140-217)||(1711916-1711993)
chr3 (138-211)||(4490822-4490894)
chr3 (94-195)||(8326135-8326236)
chr3 (92-145)||(19202398-19202451)
chr3 (138-199)||(23877728-23877789)
chr3 (129-202)||(35322042-35322113)
chr3 (93-208)||(15671118-15671233)
[»] chr8 (22 HSPs)
chr8 (93-214)||(18131188-18131309)
chr8 (116-214)||(40607318-40607416)
chr8 (92-208)||(10451893-10452011)
chr8 (144-216)||(12958923-12958995)
chr8 (118-214)||(4989717-4989813)
chr8 (138-213)||(27283333-27283407)
chr8 (109-214)||(13873709-13873815)
chr8 (129-211)||(20821923-20822005)
chr8 (109-213)||(15869007-15869111)
chr8 (140-216)||(34085199-34085275)
chr8 (92-238)||(11150918-11151065)
chr8 (92-208)||(20542382-20542499)
chr8 (138-209)||(33621408-33621479)
chr8 (91-198)||(34678218-34678325)
chr8 (108-214)||(44648933-44649040)
chr8 (138-235)||(18200654-18200752)
chr8 (167-238)||(10652500-10652572)
chr8 (91-167)||(30924208-30924284)
chr8 (138-248)||(3347471-3347582)
chr8 (129-216)||(12987634-12987721)
chr8 (95-213)||(35901412-35901531)
chr8 (167-238)||(10654867-10654939)
[»] chr4 (34 HSPs)
chr4 (69-214)||(16831096-16831241)
chr4 (92-238)||(2908181-2908328)
chr4 (93-238)||(53142777-53142924)
chr4 (95-208)||(55090779-55090892)
chr4 (107-237)||(28299261-28299392)
chr4 (100-188)||(19248892-19248980)
chr4 (138-213)||(45921335-45921410)
chr4 (69-214)||(9119213-9119359)
chr4 (129-214)||(51100021-51100106)
chr4 (92-199)||(5645657-5645764)
chr4 (122-213)||(4860143-4860234)
chr4 (94-198)||(37461778-37461881)
chr4 (129-188)||(32325057-32325116)
chr4 (109-202)||(50101287-50101381)
chr4 (140-208)||(14347124-14347191)
chr4 (94-213)||(20775069-20775189)
chr4 (109-202)||(37992868-37992958)
chr4 (92-215)||(34236175-34236299)
chr4 (140-214)||(40298015-40298089)
chr4 (129-181)||(32653879-32653931)
chr4 (130-208)||(32543983-32544060)
chr4 (135-181)||(32651953-32651999)
chr4 (95-242)||(48524493-48524640)
chr4 (153-214)||(31089511-31089572)
chr4 (91-213)||(22812064-22812187)
chr4 (129-216)||(31647754-31647841)
chr4 (130-215)||(21762093-21762176)
chr4 (139-213)||(22611893-22611967)
chr4 (69-208)||(30694258-30694395)
chr4 (108-208)||(12094969-12095070)
chr4 (94-147)||(35808568-35808621)
chr4 (178-239)||(28668388-28668451)
chr4 (129-185)||(41142318-41142374)
chr4 (138-213)||(48400920-48400996)
[»] chr1 (31 HSPs)
chr1 (111-238)||(27513-27641)
chr1 (122-214)||(31160752-31160844)
chr1 (109-214)||(34382628-34382733)
chr1 (122-193)||(28490665-28490736)
chr1 (143-214)||(39283717-39283788)
chr1 (140-214)||(11065862-11065936)
chr1 (95-208)||(13969100-13969214)
chr1 (122-188)||(45438985-45439051)
chr1 (92-213)||(50015771-50015893)
chr1 (123-208)||(48375268-48375353)
chr1 (119-213)||(41936164-41936262)
chr1 (101-184)||(17995194-17995277)
chr1 (149-238)||(35876802-35876892)
chr1 (138-174)||(27160335-27160371)
chr1 (86-185)||(46836188-46836288)
chr1 (129-176)||(27908952-27908999)
chr1 (128-213)||(10226458-10226543)
chr1 (128-213)||(11449092-11449177)
chr1 (138-214)||(8001742-8001818)
chr1 (168-235)||(40430884-40430952)
chr1 (109-215)||(33148125-33148232)
chr1 (131-213)||(52762298-52762383)
chr1 (95-208)||(26890070-26890183)
chr1 (140-213)||(9209273-9209346)
chr1 (89-161)||(33827873-33827945)
chr1 (89-161)||(33840020-33840092)
chr1 (92-176)||(38597475-38597560)
chr1 (143-208)||(47496864-47496928)
chr1 (129-217)||(30627607-30627695)
chr1 (140-208)||(35873495-35873563)
chr1 (99-214)||(46295866-46295982)
[»] scaffold0123 (1 HSPs)
scaffold0123 (69-208)||(17506-17646)
[»] scaffold0017 (1 HSPs)
scaffold0017 (95-176)||(31466-31547)
[»] scaffold0204 (1 HSPs)
scaffold0204 (154-237)||(15337-15421)
[»] scaffold0039 (1 HSPs)
scaffold0039 (138-216)||(29980-30058)
[»] scaffold0011 (1 HSPs)
scaffold0011 (140-213)||(12923-12996)
[»] scaffold0002 (1 HSPs)
scaffold0002 (146-214)||(120719-120787)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 118 - 499
Target Start/End: Original strand, 2398030 - 2398413
Alignment:
Q  118 taactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||  ||    
T  2398030 taactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatattttcaagataaattttctatttatagattccttaatcatttcct 2398129  T
Q  218 gagaacaccggttagcaagactcttttttctccctttgcattggctctttcttcaaattggagnnnnnnnnnc--ggtatttattttcctaattaagcca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            | |||||||||||||||||||||||    
T  2398130 gagaacaccggttagcaagactcttttttctccctttgcattggctctttcttcaaattggaggaaaaaaacaaagctatttattttcctaattaagcca 2398229  T
Q  316 atattaactcacattcataaatacatcatcactttttcttttatatatatgatcatgaattgtatacatcatatcaaatcacatattcttgcaattatcc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2398230 atattaactcacattcataaatacatcatcactttttcttttatatatatgatcatgaattgtatacatcatatcaaatcacatattcttgcaattatcc 2398329  T
Q  416 aataccactactttgctttttattacttacacgccatttgcacttatgcactacaaccaaattatcttgagtagtataatctac 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2398330 aataccactactttgctttttattacttacacgccatttgcacttatgcactacaaccaaattatcttgagtagtattatctac 2398413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 6770828 - 6770946
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaa--gtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    ||||||||||||| ||||||||||| | |||||||| |||||  || |||||||||||| ||||||||||||||||| ||||||||| |||| ||||||     
T  6770828 ggcattggttaagcaaccaaaacaagtcactttttataaaaaaagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagataaatttt 6770927  T
Q  190 ctatttatagattccttaa 208  Q
    |||||||||| ||||||||    
T  6770928 ctatttatagtttccttaa 6770946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 32800176 - 32800325
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaactttttagaaaaag--tgatgtaattattacttaatcaaaagtcaaaa 166  Q
    ||||||||||| |||||| |   |||||| |||||| ||||||||  | ||| |||||| |||||   || ||||||||||| |||||||||| ||||||    
T  32800176 agaatgctaaacagtgccctcagggcatttgttaagcaaccaaaagtagtaattttttataaaaaaaatggtgtaattattatttaatcaaaaatcaaaa 32800275  T
Q  167 cttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  32800276 cttatatttttaagacaaattttctatttatagtttccttaaccattgtc 32800325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 20208113 - 20208007
Alignment:
Q  109 caaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||| || |||||||  |||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||  ||||||||||||| ||||    
T  20208113 caaaacaagtagctttttattaaaagtaatgtaattattacttaatcaaaagtcaatacttatattttcaaaacaaattttatatttatagattcgttaa 20208014  T
Q  209 tcattgt 215  Q
     ||||||    
T  20208013 ccattgt 20208007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 22102136 - 22102030
Alignment:
Q  109 caaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||| || |||||||  |||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||  ||||||||||||| ||||    
T  22102136 caaaacaagtagctttttattaaaagtaatgtaattattacttaatcaaaagtcaatacttatattttcaaaacaaattttatatttatagattcgttaa 22102037  T
Q  209 tcattgt 215  Q
     ||||||    
T  22102036 ccattgt 22102030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 28048828 - 28048742
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||  ||||||||    
T  28048828 tttttataaaaagtggtgtaattattacttaattaaaagtcaaaacttatatttttaaaacaaattttctatttataatttccttaa 28048742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 2397682 - 2397768
Alignment:
Q  30 aaaataactacattactttaaataaccctacnnnnnnnnagaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaa 116  Q
    ||||||||||||||||||||||||||||||         ||||||||| |||||||| || | ||||||||||||||||||||||||    
T  2397682 aaaataactacattactttaaataaccctaattttttttagaatgctagagagtgcccttaaagcattggttaagtaaccaaaacaa 2397768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 10008190 - 10008307
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttag-aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttccta 192  Q
    ||||||||||| |||||||| || ||| ||||||  |||||||| |||||||||||||| ||||||||| |    |||||||||||||||||| || ||     
T  10008190 cattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct- 10008288  T
Q  193 tttatagattccttaatca 211  Q
    ||| |||||||||||||||    
T  10008289 tttttagattccttaatca 10008307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 2613432 - 2613359
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagatt 202  Q
    |||| |||||| ||||||||||| |||||||||   ||||||||||||||||||||| || |||||||| ||||    
T  2613432 aaaatgtgatgaaattattacttgatcaaaagtagcaacttatatttttaagacaaaatttctatttatggatt 2613359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 22552229 - 22552298
Alignment:
Q  98 ggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    |||||||| || ||||||| ||| |||||| ||||||| |||||||||||||||||| |||||| |||||    
T  22552229 ggttaagtcactaaaacaagtaaatttttataaaaagttatgtaattattacttaattaaaagttaaaac 22552298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 9213160 - 9213040
Alignment:
Q  94 cattggttaagtaaccaaaacaat---taactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    ||||||||||| |||||||||||    |||||||||| |||||||  |||||||||||||| ||||||| || |||| || ||||| |||||||||||      
T  9213160 cattggttaagaaaccaaaacaagcagtaactttttataaaaagtagtgtaattattacttgatcaaaaatc-aaacata-attttcaagacaaattttt 9213063  T
Q  191 tatttatagattccttaatcatt 213  Q
    ||||||||| || ||||| ||||    
T  9213062 tatttatagttttcttaaccatt 9213040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 16969701 - 16969637
Alignment:
Q  86 ctttgaggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattact 150  Q
    ||||||||||||  ||||| ||||||||||| ||||||||   ||||||||||||||||||||||    
T  16969701 ctttgaggcattatttaagcaaccaaaacaaataacttttataaaaaagtgatgtaattattact 16969637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 5611244 - 5611130
Alignment:
Q  95 attggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||||||  | ||||||||| ||| |||||| ||| ||||  | ||||||||| || || |||||| | | ||||||||| ||||||||| || ||||    
T  5611244 attggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttctat 5611145  T
Q  194 ttatagattccttaa 208  Q
    |||||||||||||||    
T  5611144 ttatagattccttaa 5611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 31490385 - 31490471
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaaga-caaatttcctatttatagattccttaatcattgt 215  Q
    ||||| || ||||||||||| |||  ||||||| |||||||||||||| |||| |||| || ||||| || |||||||||||||||||    
T  31490385 aaaaaatggtgtaattattaattagacaaaagtaaaaacttatattttcaagatcaaaatt-ctattaatggattccttaatcattgt 31490471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 17835045 - 17834977
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||||||||||||||||| | | |||||||||  |||||||  || |||||| |||| |||||||    
T  17835045 taattattacttaatcaaaagtaatatcttatatttcaaagacaatattgctatttgtagaatccttaa 17834977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 6102823 - 6102946
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    |||||||||||||| |||||||| || ||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  6102823 aggcattggttaagcaaccaaaataagtaactttttattaaaagtattgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaattttc 6102922  T
Q  191 tatttatagattccttaatcattg 214  Q
    |||||||||||||||||| |||||    
T  6102923 tatttatagattccttaaccattg 6102946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 16802026 - 16802130
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatt 194  Q
    |||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  16802026 attggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaattttctatt 16802125  T
Q  195 tatag 199  Q
    |||||    
T  16802126 tatag 16802130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 12036416 - 12036309
Alignment:
Q  101 taagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttataga 200  Q
    ||||||||||||| || ||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||     
T  12036416 taagtaaccaaaataaataactttttattaaaagtaatgtaattattacttaatcaaaagtcaaaacttatattttcaagacaaattttctatttatagg 12036317  T
Q  201 ttccttaa 208  Q
    ||||||||    
T  12036316 ttccttaa 12036309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 14152613 - 14152445
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    ||||||||||| | ||||||   || |||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||| || |||| || ||||    
T  14152613 agaatgctaaacaatgccttaagggtattggttaagtaaccaaaacaagtaacttttttataaaaagtggtgtaattattacttcataaaaaatctaaac 14152514  T
Q  168 ttatatttttaagacaaatttcctatttatagattccttaatcattgtc-tgagaacaccggttagcaa 235  Q
    || || |||||||| |||||| |||||||||  || ||||| ||||||| ||||| |||||||||||||    
T  14152513 ttttaattttaagataaattttctatttataattttcttaaccattgtcatgagatcaccggttagcaa 14152445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 20527111 - 20527011
Alignment:
Q  105 taaccaaaacaattaactttttagaaaaagtgatgtaattattac-ttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattc 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||||| | ||||||||  ||||||||||||||    
T  20527111 taaccaaaacaagtaactttttagaaaaagtgatgtaattattactttaattaaaaatcaaaacttctattttcatgacaaattatctatttatagattc 20527012  T
Q  204 c 204  Q
    |    
T  20527011 c 20527011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 35290679 - 35290758
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtct 217  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  35290679 tgtaaatattacttaatcaaaagtcaaaacatatatttttaagacaaattttctaattatagattacttaatcattgtct 35290758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 3600108 - 3600246
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    ||||| ||||| |||||||| ||  ||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||| |  |||    
T  3600108 cattgattaagcaaccaaaataaaaaactttttataaaaagtaatgtaattattacttaattaaaattcaaaacttatattttcaagacaaatattttat 3600207  T
Q  194 ttatagattccttaatcattg-tctgagaacaccggtta 231  Q
    |||||| || ||||| |||||  |||||| |||||||||    
T  3600208 ttatagttttcttaaccattgccctgagagcaccggtta 3600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 6830262 - 6830385
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    |||||||||||||| ||||||||||| ||| ||||| |  ||||||  ||||||||||| | |||||||  ||| |||||||||||| |||||| ||||     
T  6830262 aggcattggttaagcaaccaaaacaagtaatttttttattaaaagtagtgtaattattattgaatcaaatttcagaacttatattttcaagacacatttt 6830361  T
Q  190 ctatttatagattccttaatcatt 213  Q
    ||||||||| ||||||||| ||||    
T  6830362 ctatttataaattccttaaccatt 6830385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 2033499 - 2033567
Alignment:
Q  141 aattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaat 209  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||  ||||||||| |||||||||    
T  2033499 aattattacttaatcaaaagtcaaaacttatatttttaacctaaattttttatttatagtttccttaat 2033567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 15139281 - 15139166
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatt 194  Q
    |||||||||| || ||||| || ||| |||||| |||||||  ||||||||   ||||||||||| ||||| |||||||||| |||||||||||  ||||    
T  15139281 attggttaagcaatcaaaataagtaattttttataaaaagtagtgtaatta---cttaatcaaaaatcaaatcttatattttcaagacaaattttttatt 15139185  T
Q  195 tatagattccttaatcatt 213  Q
    ||||| |||||||| ||||    
T  15139184 tatagtttccttaaccatt 15139166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 39034592 - 39034461
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    ||||||||||| |||||| |   |||||||||| || |||||||||||| |  ||||| | ||||  |  ||||||||||||||||||||||||||||||    
T  39034592 agaatgctaaacagtgccctgagggcattggtttagcaaccaaaacaataattttttttataaaatatagtgtaattattacttaatcaaaagtcaaaac 39034493  T
Q  168 ttatatttttaagacaaatttcctatttatag 199  Q
    ||||||||| |||||  |||| ||||| ||||    
T  39034492 ttatattttcaagacctattttctattaatag 39034461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 30840716 - 30840599
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    |||||||| ||||| | ||||||||| ||| |||| | |||||||  |||||| ||||||| ||||||||| | | |||||||||| ||||||||||| |    
T  30840716 aggcattgattaagcatccaaaacaagtaagttttcaaaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttc 30840617  T
Q  191 tatttatagattccttaa 208  Q
    | ||  ||||||||||||    
T  30840616 tgttagtagattccttaa 30840599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 5471101 - 5471170
Alignment:
Q  119 aactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaattt 188  Q
    ||||||||| ||||| | |||| ||||||| |||||||||||||||||| |||||||  |||||||||||    
T  5471101 aactttttataaaaaataatgttattattatttaatcaaaagtcaaaacatatatttccaagacaaattt 5471170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 2611229 - 2611149
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagaca-aatttcctatttatagattccttaa 208  Q
    ||||||| |||||||||||||||||| |||||| | | |||||||||  |||||| || || |||||||||||||||||||    
T  2611229 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagacataaatttctatttatagattccttaa 2611149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 30293904 - 30293824
Alignment:
Q  128 gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||| | ||||||| ||||||| ||||||||| | | ||||||||||||||||||| || |||||| ||||||| ||||    
T  30293904 gaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaa 30293824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 29552373 - 29552443
Alignment:
Q  144 tattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||||||||| ||||||| ||||||||   | |||||||| |||||||||| |||||||| |||||    
T  29552373 tattacttaatcaaatgtcaaaatttatatttacgaaacaaattttctatttatagtttccttaaccattg 29552443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 35349441 - 35349387
Alignment:
Q  162 caaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    ||||||||||||||| || | |||||| |||||||||||||| ||||||||||||    
T  35349441 caaaacttatattttcaaaataaattttctatttatagattctttaatcattgtc 35349387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 5002920 - 5002977
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaat 186  Q
    |||||||  |||| ||||||||||||||||||| ||||||| |||||| |||||||||    
T  5002920 aaaaagttgtgtagttattacttaatcaaaagttaaaacttttattttcaagacaaat 5002977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 9114930 - 9115032
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgt-ctgagaacaccggttagcaagac 238  Q
    ||||||||||||||| |||| | |||| ||||||||| |||| |||||| ||  |||||  || |||||||||||| |||||  || |||||||||||||    
T  9114930 taattattacttaataaaaaattaaaatttatattttcaagataaattttcttcttataattttcttaatcattgtcctgag--catcggttagcaagac 9115027  T
Q  239 tcttt 243  Q
     ||||    
T  9115028 acttt 9115032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 35626647 - 35626708
Alignment:
Q  155 caaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    ||||||| |||||||||||||| || ||||| || ||||| || |||||||||| |||||||    
T  35626647 caaaagtaaaaacttatattttcaaaacaaaatttctattaatggattccttaaccattgtc 35626708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 28511265 - 28511182
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaa--gtgatgtaattattacttaatcaaaagtcaaaacttatatttt 176  Q
    |||||||||| ||||||||||  ||| |||||| |||||  ||  ||||||||||| || ||||||||| |||||||| |||||    
T  28511265 attggttaagcaaccaaaacatgtaagtttttataaaaaaagtagtgtaattattaattcatcaaaagtaaaaacttacatttt 28511182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 34346953 - 34347025
Alignment:
Q  167 cttatatttttaagacaaatttcctatttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    |||||||||| |||||||||||  ||||| |||||||||||| ||||| | |||| |||| |||||| |||||    
T  34346953 cttatattttcaagacaaattttttatttgtagattccttaaccattgctatgaggacactggttagtaagac 34347025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 18135 - 18005
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaa--gtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    ||||||||||||| ||||||||||| |||||||||| |||||  ||  |||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  18135 ggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaatttt 18036  T
Q  190 ctatttatagattccttaatcattgtctgag 220  Q
    |||||||||| |||||||| || ||||||||    
T  18035 ctatttatagtttccttaaccaatgtctgag 18005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 1870634 - 1870464
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaact 168  Q
    ||||||||||| |||||| | | ||||||||||||| ||| ||||||| |||||||||| |||||    |||||||||||||||||||||||||||| ||    
T  1870634 agaatgctaaacagtgccctcggggcattggttaagcaacaaaaacaagtaactttttataaaaaaatgtgtaattattacttaatcaaaagtcaaagct 1870535  T
Q  169 tatatttttaagacaaatttcctatttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    |||||||| ||||||||||| |||||||||| |||||||| |||||  |||||  ||| ||||||||||||    
T  1870534 tatattttcaagacaaattttctatttatagtttccttaaccattgccctgagggcactggttagcaagac 1870464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 34501707 - 34501589
Alignment:
Q  96 ttggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctattt 195  Q
    ||||||||| ||||||| ||| |||||||||| ||||| |  ||||||||||||||||| |||| |||||| ||||||||||||||||| |||  |||||    
T  34501707 ttggttaagcaaccaaatcaaataactttttataaaaaattgtgtaattattacttaataaaaaatcaaaaattatatttttaagacaacttttttattt 34501608  T
Q  196 atagattccttaatcattg 214  Q
    |||||||||||||||||||    
T  34501607 atagattccttaatcattg 34501589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 33635540 - 33635655
Alignment:
Q  123 ttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg-tctgaga 221  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||   ||||||| ||||| ||| ||||| ||||||     
T  33635540 ttttataaaaagtgatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaatttttcatttataaattcc-taaacattgctctgagg 33635638  T
Q  222 acaccggttagcaagac 238  Q
     ||||||||||||||||    
T  33635639 gcaccggttagcaagac 33635655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 13835835 - 13835953
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatt 194  Q
    |||||||||| || ||||| || ||| |||||| ||||| |  ||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||    
T  13835835 attggttaagcaagcaaaataaataattttttataaaaaatagtgtaattattacttaataaaaagtcaaaacttatattttcaagacagattttctatt 13835934  T
Q  195 tatagattccttaatcatt 213  Q
    ||||| || ||||| ||||    
T  13835935 tatagttttcttaaccatt 13835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 5444582 - 5444487
Alignment:
Q  119 aactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||| ||| |||||||  |||| |||||||||||| ||||||||||||||||||||| |||||||| ||  ||||||||| ||| ||||||||||    
T  5444582 aacttattataaaaagttgtgtatttattacttaattaaaagtcaaaacttatattttcaagacaaaatttttatttatagtttctttaatcattg 5444487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 43131881 - 43131783
Alignment:
Q  88 ttgaggcattggttaagtaaccaaaacaattaactttttagaaaaagtga-tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaa 185  Q
    ||||||||||| ||||  ||||||||||| ||| |||||| ||||||  | |||||||||||||| |||||||||  ||||||| ||||||||||||||    
T  43131881 ttgaggcattgattaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 43131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 29525652 - 29525724
Alignment:
Q  141 aattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||| ||  |||||||||||| ||||| ||||    
T  29525652 aattattacttaatcaaaagtcaaaatttatatttttgagataaaatttttatttatagatttcttaaccatt 29525724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 40346710 - 40346856
Alignment:
Q  99 gttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttat 197  Q
    |||||||| |||||| || ||| |||||| ||||||||  || ||| |||| || ||||||| | | | |||||||||| || ||||| || |||| | |    
T  40346710 gttaagtatccaaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgt 40346809  T
Q  198 agattccttaatcattg-tctgagaacaccggttagcaagactcttt 243  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||||||    
T  40346810 agattccttaaccattactctgagagcaccggttagcaagactcttt 40346856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 23453340 - 23453457
Alignment:
Q  93 gcattggttaagtaaccaaaacaattaacttttta--gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    |||||||||||||| |||||||||  || ||||||  ||||||||  ||||||  ||| || ||||||||| | | |||||||||| |||||||| ||      
T  23453340 gcattggttaagtatccaaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttt 23453439  T
Q  191 tatttatagattccttaa 208  Q
    ||||| ||||||||||||    
T  23453440 tatttgtagattccttaa 23453457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 27896453 - 27896578
Alignment:
Q  87 tttgaggcattggttaagtaaccaaaacaattaactttttag-aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaa 185  Q
    ||||||||| |||||||  |||||||| || ||| |||| |  |||||||  ||||||||||||| |||||||||| | | ||||||||| ||| |||||    
T  27896453 tttgaggcagtggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaa 27896552  T
Q  186 tttcctatttatagattccttaatca 211  Q
    ||| |||||  | ||| |||||||||    
T  27896553 ttttctattcttggataccttaatca 27896578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 13618193 - 13618290
Alignment:
Q  110 aaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaat 209  Q
    ||||||| |||||||||| |||||||| |||||||||        ||| |||||||||||||||||||||||||| |||  ||||||||  || |||||     
T  13618193 aaaacaaataactttttataaaaagtggtgtaattat--------caagagtcaaaacttatatttttaagacaatttttatatttataattttcttaac 13618284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 38193759 - 38193671
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtct 217  Q
    |||||||  ||||||||||| || ||||||| | |||||||| |||||||| | ||| || ||||| | |||||||||||||| |||||    
T  38193759 aaaaagtagtgtaattattatttcatcaaaaataaaaacttacatttttaaaataaaatttctattaaaagattccttaatcaatgtct 38193671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 13738510 - 13738396
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaag-tgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||||||| | ||||||||| ||| |||||| |||||  |  |||||| ||||||| |||| |||| | | |||||||||| || ||||| ||  |||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttat 13738411  T
Q  194 ttatagattccttaa 208  Q
    |||||||||||||||    
T  13738410 ttatagattccttaa 13738396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 30905411 - 30905461
Alignment:
Q  165 aacttatatttttaagacaaatttcctatttatagattccttaatcattgt 215  Q
    ||||||||||||||||||||| || |||||||||  |||||||| ||||||    
T  30905411 aacttatatttttaagacaaagttgctatttataatttccttaaccattgt 30905461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 18717882 - 18717971
Alignment:
Q  128 gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtct 217  Q
    ||||||||  |||||| ||||||| ||||||||| | | ||||||||||||| | ||| || |||||| || ||||||||| || |||||    
T  18717882 gaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgtaaattccttaaccaatgtct 18717971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 40574261 - 40574144
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    |||| |||||||| | ||||||||| ||  |||| | ||||||||  |||||||||||||  ||||||||| | |  ||||||||  |||||||| || |    
T  40574261 ggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttc 40574162  T
Q  191 tatttatagattccttaa 208  Q
    ||||| ||||||||||||    
T  40574161 tatttgtagattccttaa 40574144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 4623810 - 4623730
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaat 209  Q
    ||||| || ||||||||||| ||  | |||||| | |||||||| |||||| ||||||||  ||||||||||||| |||||    
T  4623810 aaaaattggtgtaattattagttggttaaaagtaacaacttataattttaacacaaattttttatttatagattctttaat 4623730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 24937827 - 24937974
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcct 191  Q
    ||||||||||||| |||||||| || |||||||||| |||||||| ||||||||||||||||| |||||||||||  ||||||||||| |||||||| ||    
T  24937827 ggcattggttaaggaaccaaaataagtaactttttataaaaagtggtgtaattattacttaattaaaagtcaaaatctatatttttaaaacaaattttct 24937926  T
Q  192 atttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    |||||||| |||||||| |||||  |||||  ||| ||||||||||||    
T  24937927 atttatagtttccttaaccattgccctgagggcactggttagcaagac 24937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 8656291 - 8656439
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttag--aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcct 191  Q
    ||||||||||| ||||||||||| | |||||||    |||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||| ||    
T  8656291 cattggttaagcaaccaaaacaagtgacttttttataaaaaagtggtataattattacttaatcaaaagttaaaacttatttttttaagacaaattttct 8656390  T
Q  192 atttatagattccttaatcattgtc--tgagaacaccggttagcaagac 238  Q
    |||||||| |||||||| |||||||  ||||||||| ||||||||||||    
T  8656391 atttatagtttccttaaccattgtctttgagaacactggttagcaagac 8656439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 39786571 - 39786445
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    |||||||||||||| ||||||||||| ||||||||| |  ||||||  ||||||||||| |||||||||||| |||||||||||||| ||||||| |||     
T  39786571 aggcattggttaagcaaccaaaacaaataacttttttattaaaagtagtgtaattattatttaatcaaaagttaaaacttatattttcaagacaagtttt 39786472  T
Q  190 ctatttatagattccttaatcattgtc 216  Q
    ||||||||||||||||||| |||||||    
T  39786471 ctatttatagattccttaaccattgtc 39786445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 47537423 - 47537536
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||| |||||| ||| ||||||  |||||||||| |||||||  |||||||||||||||||||||| |||||||||||||||| |||||||||||   ||    
T  47537423 cattagttaagcaactaaaacaggtaactttttataaaaagttgtgtaattattacttaatcaaaaatcaaaacttatattttcaagacaaatttttcat 47537522  T
Q  194 ttatagattcctta 207  Q
    |||||| |||||||    
T  47537523 ttatagtttcctta 47537536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 40721412 - 40721504
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaa-gtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    |||||| ||||| || |||||||| ||||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| |||||||||    
T  40721412 tttttataaaaaatggtgtaattactacttaatcaaaaagttaaaacttatatttttatgacaaattttctatttataaattctttaatcatt 40721504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 21857715 - 21857601
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||| |||||||||| |||| || ||||||||||  ||||||  ||||||||||| |||| ||||  |||||||||||||||  ||||||||||| ||||    
T  21857715 cattagttaagtaacaaaaataagtaactttttattaaaagtagtgtaattattaattaaccaaatatcaaaacttatatttacaagacaaattttctat 21857616  T
Q  194 ttatagattccttaa 208  Q
    ||||| |||| ||||    
T  21857615 ttataaattctttaa 21857601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 12810228 - 12810112
Alignment:
Q  128 gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatca-ttgtctgagaacacc 226  Q
    ||||||||  ||||||||||||||  |||||||| | | ||||||||||||||||||| ||   |||||||||||| ||||||| || |||||| ||| |    
T  12810228 gaaaaagttgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaattttcatttatagattcattaatcatttctctgaggacatc 12810129  T
Q  227 ggttagcaagactcttt 243  Q
    |||||||||||| ||||    
T  12810128 ggttagcaagacccttt 12810112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 25780245 - 25780303
Alignment:
Q  141 aattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatag 199  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||    
T  25780245 aattattacttaattaaaagtcaaaacttatatttttcagacaaattttttatttatag 25780303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 27915251 - 27915189
Alignment:
Q  152 aatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||||||||||||||||||||||||| |||||||| |||| ||||  ||||||||||||||    
T  27915251 aatcaaaagtcaaaacttatatttttaacacaaattttctatatataatttccttaatcattg 27915189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 37532668 - 37532524
Alignment:
Q  97 tggttaagtaaccaaaacaattaactttttag--aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatt 194  Q
    |||||||| |||| |||||| |||||||||    ||||| || |||||||||| |||||||||||||| ||| |||||||||||| | ||||||  || |    
T  37532668 tggttaagcaaccgaaacaagtaacttttttataaaaaaatggtgtaattatttcttaatcaaaagtcgaaatttatatttttaatataaattttatact 37532569  T
Q  195 tatagattccttaatca-ttgtctgagaacaccggttagcaagac 238  Q
    ||||| |||||||| || ||  |||||| ||| ||||||||||||    
T  37532568 tatagtttccttaaccacttccctgagagcactggttagcaagac 37532524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 1112223 - 1112147
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||||||||||| || ||||||||||| ||||| ||| || |||||||| |||||||||| ||||| ||||||||    
T  1112223 tgtaattattacttcattaaaagtcaaaatttataatttcaaaacaaattttctatttatagtttcctcaatcattg 1112147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 30095316 - 30095441
Alignment:
Q  93 gcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatattttt--aagacaaatttcc 190  Q
    |||||||||||  || |||||||| ||| |||| | ||||  || ||||| ||||||| |||||||||| ||||||||||| |||  ||||| ||||| |    
T  30095316 gcattggttaaacaagcaaaacaagtaa-ttttaataaaagatggtgtaactattactaaatcaaaagttaaaacttatatattttcaagactaattttc 30095414  T
Q  191 tatttatagattccttaatcattgtct 217  Q
    ||||| |||||| ||||||||||||||    
T  30095415 tatttgtagatttcttaatcattgtct 30095441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 32279767 - 32279688
Alignment:
Q  97 tggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttt 176  Q
    |||||||| ||| |||||||| |||||||||  |||| | |||||||||||||||||| |||| |||| |||||||||||    
T  32279767 tggttaagcaactaaaacaatcaactttttattaaaaataatgtaattattacttaataaaaaatcaacacttatatttt 32279688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 46300699 - 46300762
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaa 185  Q
    |||||| ||||||||||||||||||||| | || |||||||||||| |||||||| ||||||||    
T  46300699 tttttataaaaagtgatgtaattattacatgataaaaagtcaaaacatatattttcaagacaaa 46300762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 22555738 - 22555823
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||| || |||||||||||||| ||||||| |||||||||||||||| |||| ||| || ||||||||  |||| |||| |||||    
T  22555738 aaaaaatgttgtaattattacttgatcaaaaatcaaaacttatattttaaagataaaatttctatttatgaattctttaaccattg 22555823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 44845840 - 44845894
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaa 184  Q
    |||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||    
T  44845840 aaaaagtgatataat-attacctaatcaaaagtcaaaatttatatttttaagacaa 44845894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 16979937 - 16980031
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaa 185  Q
    ||||||||||||| | ||||||||| ||| |||||| ||||||||  ||| |||||||||  ||||||||| | | |||||||||| ||||||||    
T  16979937 ggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaa 16980031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 19677037 - 19677107
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||| ||||||||||||||||| | | |||||||||| |||||||| || |||||| | ||||||||||    
T  19677037 tgtaatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttctatttgtcgattccttaa 19677107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 39386951 - 39387045
Alignment:
Q  142 attattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc-tgagaacaccggttagcaa 235  Q
    |||||||||| ||||||||| |||| ||||||||||| || ||||||  ||||||||| ||| |||| ||||  | ||||| |||||||||||||    
T  39386951 attattacttgatcaaaagttaaaatttatatttttaggataaattttttatttatagtttctttaaccattaccttgagagcaccggttagcaa 39387045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 28664595 - 28664542
Alignment:
Q  161 tcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||| |||||||| || |||||||| ||||||||||||||||||| |||||    
T  28664595 tcaaaacgtatattttcaatacaaattttctatttatagattccttaaccattg 28664542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 47445425 - 47445357
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||||||| ||||||||| |||||||||||||| ||  |||| || |||||||  ||||||||||    
T  47445425 taattattacttcatcaaaagtaaaaacttatattttcaaagcaaaatttctatttaaggattccttaa 47445357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 5871239 - 5871308
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatc 210  Q
    |||||||||||| || ||| || | |||||||||||| ||  |||||||| ||||||||||||||||||||    
T  5871239 taattattacttgattaaacgtaacaacttatattttgaaaccaaatttc-tatttatagattccttaatc 5871308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 11740441 - 11740359
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatca 211  Q
    |||||||| |||||| |||| || ||||||||| | |  ||||||||| ||||||| ||| |||||  |||||||||||||||    
T  11740441 aaaaagtggtgtaataattagttgatcaaaagtaacagtttatattttcaagacaatttttctattattagattccttaatca 11740359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 8896669 - 8896592
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgt 215  Q
    |||||| ||||| | ||||||||| | | ||||||||||||||||||| ||  ||||| ||||||| |||| ||||||    
T  8896669 tgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaaacattgt 8896592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 34993209 - 34993152
Alignment:
Q  128 gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaa 185  Q
    ||||||||  ||||||||||| || ||||||||| | | |||||||||||||||||||    
T  34993209 gaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaa 34993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 34228398 - 34228251
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaact 168  Q
    ||||||| ||| |||||| || ||| |||||||||| ||  ||||| | |||||||||| ||||||||||| |||||||| ||||||||||||||||| |    
T  34228398 agaatgccaaacagtgcccttaaggtattggttaagcaattaaaacgagtaactttttataaaaagtgatgaaattattatttaatcaaaagtcaaaatt 34228299  T
Q  169 tatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    ||||||||||||||||||||  ||||||||| |||||||| |||||||    
T  34228298 tatatttttaagacaaattttttatttatagtttccttaaccattgtc 34228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 48252380 - 48252267
Alignment:
Q  100 ttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatag 199  Q
    |||||||| |||||||  ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||| ||||||  |||||||||    
T  48252380 ttaagtaatcaaaacacgtaactttttagaaaaagtgatgtcattattatttactcaaaagtcaaaacttatattttcaagataaattttttatttatag 48252281  T
Q  200 attccttaatcatt 213  Q
    ||||||||| ||||    
T  48252280 attccttaaccatt 48252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 41287954 - 41287876
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  41287954 tgtaattattacttaatcaaaaatcaaaacttatatttttaaaacaaattttctatttatagtttccttaatcattgtc 41287876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 4020096 - 4020218
Alignment:
Q  95 attggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||||||||||||||||||| ||| |||||| |||||| |  |||||| ||||||||||||||| | | |  ||||||||| |||||||| || ||||    
T  4020096 attggttaagtaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctat 4020195  T
Q  194 ttatagattccttaatcattgtc 216  Q
    || |||||||||||| |||||||    
T  4020196 ttgtagattccttaaccattgtc 4020218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 45408784 - 45408692
Alignment:
Q  94 cattggttaagtaaccaaaacaattaac-tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaat 186  Q
    ||||||||||  ||| ||||||| |||| |||||| ||||| || ||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  45408784 cattggttaaacaacaaaaacaagtaacatttttataaaaaatggtgtaaatattacttaatcaaa-gtcaaaagttatatttttaagacaaat 45408692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 28940566 - 28940624
Alignment:
Q  88 ttgaggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattatt 147  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  28940566 ttgatgcattggttaagtagccaaaacaaataactttttagaaaaa-tgatgtaattatt 28940624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 19202249 - 19202180
Alignment:
Q  145 attacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||  |||||||| |||||||||| |||||    
T  19202249 attatttaatcaaaagccaaaacttatattttcaagaaaaattatctatttatggattccttaaccattg 19202180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 635823 - 635675
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttaga-aaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    ||||||||||||| | ||||||||  ||| ||||||   ||||||  |||||| |||| |||||||||||| | | ||||| | || |||||||| || |    
T  635823 ggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatttc 635724  T
Q  191 tatttatagattccttaatcattgtc-tgagaacaccggttagcaagac 238  Q
    ||||| |||||||||||| ||||||| ||||| ||  ||||||||||||    
T  635723 tatttgtagattccttaaccattgtcatgagagcaatggttagcaagac 635675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 2127461 - 2127363
Alignment:
Q  97 tggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctattta 196  Q
    |||||||| |||||||| || ||| |||||| |||| ||  |||||||||||||||||||||| ||||||   ||||| |||||||||||||  ||||||    
T  2127461 tggttaagcaaccaaaataagtaattttttataaaa-gtcgtgtaattattacttaatcaaaaatcaaaa---atattcttaagacaaattttttattta 2127366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 29032410 - 29032524
Alignment:
Q  95 attggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||| ||||||| | |||||||  || |||||| ||||||||  |||||| ||||||| ||||||||| | | ||||||||||||||||||| || || |    
T  29032410 attgattaagtatctaaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctgt 29032509  T
Q  194 ttatagattccttaa 208  Q
    || |||| |||||||    
T  29032510 ttgtagaatccttaa 29032524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 44291310 - 44291231
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    ||||||| |||||||||||||||||| |||||| | |  ||||||||  |||||| |  | |||||||||||||||||||    
T  44291310 aaaaagtaatgtaattattacttaataaaaagtgacagtttatatttccaagacagaaattctatttatagattccttaa 44291231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 25958122 - 25958052
Alignment:
Q  146 ttacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    |||||| ||||||||| | | ||||||||||||||||||||||  ||| | |||||| |||||| ||||||    
T  25958122 ttactttatcaaaagtaacatcttatatttttaagacaaattttttatatgtagatttcttaattattgtc 25958052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 1711993 - 1711916
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtct 217  Q
    ||||||||||||| ||||| || | | |||||||||| |||||||| ||  || || |||||||||||| ||||||||    
T  1711993 taattattacttagtcaaatgtaacatcttatattttcaagacaaaatttataattttagattccttaaccattgtct 1711916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 4490822 - 4490894
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatca 211  Q
    ||||||||||| || ||||||||| |||| |||||||||| ||||||| || ||||||   |||||||||||||    
T  4490822 tgtaattattattttatcaaaagtaaaaatttatattttt-agacaaaatttctattttatgattccttaatca 4490894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 8326135 - 8326236
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    ||||| ||||||| | ||||||| ||| ||||||  ||||||| |||||| ||| ||| ||||||||| | |  |||||||||||| ||||| || ||||    
T  8326135 cattgattaagtatctaaaacaaataagtttttatgaaaagtggtgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttctat 8326234  T
Q  194 tt 195  Q
    ||    
T  8326235 tt 8326236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 19202451 - 19202398
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaatta 145  Q
    ||||||||||||| ||| ||||||||||||||||||  ||||||  ||||||||    
T  19202451 ggcattggttaagcaactaaaacaattaactttttattaaaagtagtgtaatta 19202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 23877728 - 23877789
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatag 199  Q
    |||||||||| |||||| |||||||||||||||||| || |||  ||||||  |||||||||    
T  23877728 tgtaattattgcttaattaaaagtcaaaacttatatattcaaggtaaattttttatttatag 23877789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 35322042 - 35322113
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagatt 202  Q
    ||||||| |||||||||||||||||| ||||||  ||  |||||||| ||||||||| || |||||||||||||    
T  35322042 aaaaagtaatgtaattattacttaataaaaagt-gaagtttatatttctaagacaaaatt-ctatttatagatt 35322113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 15671233 - 15671118
Alignment:
Q  93 gcattggttaagtaaccaaaacaattaactttttag-aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcct 191  Q
    |||||||||||| |||||||  || ||| ||||||  ||||||| ||||||||||||||| || |||||| | |  ||||||||  ||||||||  |  |    
T  15671233 gcattggttaag-aaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttcgaagacaaaaatttt 15671135  T
Q  192 atttatagattccttaa 208  Q
    |||||||||||||||||    
T  15671134 atttatagattccttaa 15671118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18131188 - 18131309
Alignment:
Q  93 gcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttccta 192  Q
    |||||||||||| ||||||||||| ||||||||||  ||||||  |||||||||||||||||||  |||||||||||||||||| ||||||||||| |||    
T  18131188 gcattggttaagcaaccaaaacaagtaactttttattaaaagtagtgtaattattacttaatcagtagtcaaaacttatattttcaagacaaattttcta 18131287  T
Q  193 tttatagattccttaatcattg 214  Q
    ||||| |||| |||||||||||    
T  18131288 tttatggatttcttaatcattg 18131309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 40607318 - 40607416
Alignment:
Q  116 attaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||| |||||    
T  40607318 attaactttttattaaaagtagtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatttataaatttcttaaccattg 40607416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 10451893 - 10452011
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaa-ttattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    ||||||||||||| ||| ||||||| ||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||     
T  10451893 ggcattggttaagcaactaaaacaagtaatttttttataaaaaatggtgtaaattattacttaatcaaaagtcaaaacttatatttttaatacaaaattt 10451992  T
Q  190 ctatttatagattccttaa 208  Q
     ||||||||| ||||||||    
T  10451993 ttatttatagtttccttaa 10452011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 12958923 - 12958995
Alignment:
Q  144 tattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    |||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  12958923 tattacttaatcaaaaataaaaacttatattttgaagacaaattttctatttatagattctttaatcattgtc 12958995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 4989717 - 4989813
Alignment:
Q  118 taactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||||||| ||||| | |||||||| |||||| ||||||| |||||||||||||||| |||||||||||  ||||||||| || ||||| |||||    
T  4989717 taactttttataaaaaattatgtaattgttacttgatcaaaaatcaaaacttatattttcaagacaaattttttatttatagttttcttaaccattg 4989813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 27283333 - 27283407
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    ||||||||||| ||||||||||||||||||||||| || ||| | |||||| |||||||||| |||||||| ||||    
T  27283333 tgtaattattatttaatcaaaagtcaaaacttata-ttataaaataaattttctatttatagtttccttaaccatt 27283407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 13873709 - 13873815
Alignment:
Q  109 caaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattcctta 207  Q
    |||||||||||| |||||| |||||| | ||| ||| |||||||||| |||| | | | ||||||||| |||||||||  |  |||||||||||||||||    
T  13873709 caaaacaattaagtttttatgaaaaaattatgcaatcattacttaattaaaaataacatcttatatttctaagacaaaaattttatttatagattcctta 13873808  T
Q  208 atcattg 214  Q
    |||||||    
T  13873809 atcattg 13873815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 20821923 - 20822005
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatca 211  Q
    ||||||| |||||||||||||||||| |||||| | || |||||||||||||||||   | |||| |||||||| ||||||||    
T  20821923 aaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagacaacaattctatctatagatttcttaatca 20822005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 15869111 - 15869007
Alignment:
Q  109 caaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    ||||| || |||||||||| | ||||| |||||||||||| ||||| |||| |||||| |||||||||| ||  ||||||  ||||||||| || |||||    
T  15869111 caaaataaataactttttatataaagtaatgtaattattatttaattaaaaatcaaaatttatattttttagttaaattttttatttatagttttcttaa 15869012  T
Q  209 tcatt 213  Q
     ||||    
T  15869011 ccatt 15869007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 34085275 - 34085199
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    |||||||| |||||| ||||||||||||||||||||| || ||||||||  |||||||  ||| ||||| |||||||    
T  34085275 taattattgcttaattaaaagtcaaaacttatattttcaaaacaaattttttatttatgaatttcttaaccattgtc 34085199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 11150918 - 11151065
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcct 191  Q
    ||||||||||||| |  ||||| || ||| |||||| ||||| |  |||||| |||| || ||||||||| | | ||||||||| |||||||||  |  |    
T  11150918 ggcattggttaagcattcaaaataagtaagtttttaaaaaaaattgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaatttt 11151017  T
Q  192 atttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    |||| ||||||||||||||||||  |||||  |||||||||| |||||    
T  11151018 atttgtagattccttaatcattgccctgagggcaccggttaggaagac 11151065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 20542382 - 20542499
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttag--aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    ||||||||||||| | ||||||| | ||| ||||||   |||||||| |||||| ||||||||||||||||| | | |||||||||  ||||| || ||     
T  20542382 ggcattggttaagcatccaaaacgagtaagtttttaagaaaaaagtg-tgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaattt 20542480  T
Q  190 ctatttatagattccttaa 208  Q
    |||||| ||||||||||||    
T  20542481 ctatttgtagattccttaa 20542499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 33621408 - 33621479
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaat 209  Q
    |||||| ||||||| ||||||||| |||  |||||||||||||||||| ||  ||||| |||||||||||||    
T  33621408 tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgtagattccttaat 33621479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 34678325 - 34678218
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    ||||| |||||||| |  ||||||||  ||||||| | ||||| | ||||||||||||||| ||||||||| | |  ||| ||||| ||||||||||| |    
T  34678325 aggcaatggttaagcattcaaaacaagcaacttttaataaaaaattatgtaattattacttgatcaaaagtaacattttacattttcaagacaaattttc 34678226  T
Q  191 tatttata 198  Q
    ||||||||    
T  34678225 tatttata 34678218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 44649040 - 44648933
Alignment:
Q  108 ccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattcctt 206  Q
    ||||||||| ||| |||| | ||||||||  |||||| ||||||| ||||||||| | |  ||||||||| |||||||| || |||||| ||||||||||    
T  44649040 ccaaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgtagattcctt 44648941  T
Q  207 aatcattg 214  Q
    || |||||    
T  44648940 aaccattg 44648933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 18200752 - 18200654
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc-tgagaacaccggttagcaa 235  Q
    |||||| ||||||||||||||||| | |  |||||||||||||||||| ||  ||||| |||||| ||||| |||| || |||| |||||| |||||||    
T  18200752 tgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgtagatttcttaaccattatcttgaggacaccgattagcaa 18200654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 10652572 - 10652500
Alignment:
Q  167 cttatatttttaagacaaatttcctatttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    ||||||||| ||||||||| || |||||||||||||| ||||| ||||  |||||| ||| ||||||||||||    
T  10652572 cttatatttataagacaaaatttctatttatagattctttaattattgccctgagagcactggttagcaagac 10652500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 30924284 - 30924208
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    |||||||||| ||  |||||||| || ||| |||||| ||||| |  |||||||||||||||||||||||| |||||    
T  30924284 aggcattggtcaaacaaccaaaataagtaaatttttataaaaaatagtgtaattattacttaatcaaaagtaaaaac 30924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 3347582 - 3347471
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc-tgagaacaccggttagcaag 236  Q
    |||||||||||||| || |||||| | | |||||||||| |||||||| ||  ||||| |||||| ||||| ||||||| ||||   ||  |||||||||    
T  3347582 tgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaaccattgtcatgagggtacttgttagcaag 3347483  T
Q  237 actcttttttct 248  Q
    ||| ||||||||    
T  3347482 acttttttttct 3347471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 12987721 - 12987634
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    |||||| | |||||| |||| |||||||||||| ||||||||| |||| |||||||| || | |||||  ||||| |||| |||||||    
T  12987721 aaaaagcggtgtaatcattatttaatcaaaagtaaaaacttatgttttcaagacaaaatttccatttagtgattcattaaccattgtc 12987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 35901531 - 35901412
Alignment:
Q  95 attggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||||||| | ||||||||| ||| |||||| ||||||||  || ||| |||| ||||| |||||| | | |||| ||||| || ||||| || ||||    
T  35901531 attggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctat 35901432  T
Q  194 ttatagattccttaatcatt 213  Q
    || |||||||||||| ||||    
T  35901431 ttgtagattccttaaccatt 35901412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 10654939 - 10654867
Alignment:
Q  167 cttatatttttaagacaaatttcctatttatagattccttaatcattgtc-tgagaacaccggttagcaagac 238  Q
    ||||||||| ||||||||  || || |||||| |||| |||||||||||| ||||| ||| ||||||||||||    
T  10654939 cttatatttataagacaatatttctctttataaattctttaatcattgtcttgagagcactggttagcaagac 10654867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 16831241 - 16831096
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaact 168  Q
    ||||||||||| |||| | || |||||||| ||||| ||||||||||| |||||||||| |||||||  | ||||||||||||||||||||||||||| |    
T  16831241 agaatgctaaacagtgtccttaaggcattgattaagcaaccaaaacaaataactttttataaaaagtagtataattattacttaatcaaaagtcaaaatt 16831142  T
Q  169 tatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||||| ||||||||  ||||||||| || ||||| |||||    
T  16831141 tatatttttaaaacaaattttatatttatagttttcttaaccattg 16831096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 2908328 - 2908181
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcct 191  Q
    ||||||||||||| |||||||| || | |||||||| | |||||| ||||||||||||||| |||||| |||||| ||||||||| ||||||||||| ||    
T  2908328 ggcattggttaagcaaccaaaataagtgactttttatagaaagtggtgtaattattacttactcaaaaatcaaaatttatattttcaagacaaattttct 2908229  T
Q  192 atttatagattccttaatcattgtc-tgagaacaccggttagcaagac 238  Q
    |||||||| |||||||| ||||| | |||| ||||||||||| |||||    
T  2908228 atttatagtttccttaaccattgccgtgaggacaccggttagtaagac 2908181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 53142777 - 53142924
Alignment:
Q  93 gcattggttaagtaaccaaaacaattaactttttagaaaaag-tgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcct 191  Q
    |||||||||||| |||| |||||| |||||||||| |||||  ||||||||||||||||||||||||||| |||||||||||||| | |||||||||  |    
T  53142777 gcattggttaagcaaccgaaacaaataactttttataaaaaaatgatgtaattattacttaatcaaaagttaaaacttatattttcatgacaaatttttt 53142876  T
Q  192 atttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    |||||||| |||||||| ||||| || ||| |||| ||||||||||||    
T  53142877 atttatagcttccttaaccattgttccgaggacactggttagcaagac 53142924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 55090779 - 55090892
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatt 194  Q
    |||||||||| ||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||||||||||||||| |||||||||||   |||    
T  55090779 attggttaagcaactaaaacaagtaactttttataaaaagttgtgtaattataacttaatcaaaagtcaaaacttatattttcaagacaaatttttcatt 55090878  T
Q  195 tatagattccttaa 208  Q
    ||||| ||||||||    
T  55090879 tatagtttccttaa 55090892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 28299392 - 28299261
Alignment:
Q  107 accaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattcctt 206  Q
    |||||| ||| |||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||| || | |||||| |||||||||  ||||||    
T  28299392 accaaagcaagtaactttttataaaatgtgatgtaattattatttaatcaaaagacaaaacttatattttcaatataaattttctatttataatttcctt 28299293  T
Q  207 aatcattgtc-tgagaacaccggttagcaaga 237  Q
    || ||||||| | |||||||||||||| ||||    
T  28299292 aaccattgtcataagaacaccggttagaaaga 28299261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 19248892 - 19248980
Alignment:
Q  100 ttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaattt 188  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  19248892 ttaaggaaccaaaacaactaattttttataaaaagtgatgtaatcattacttaattaaaaatcaaaacttatatttttaagacaaattt 19248980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 45921410 - 45921335
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  45921410 tgtaattattacttaatcaatagtcaaaacttatattttcaagacaaattttctatttatagattccttaaccatt 45921335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 9119213 - 9119359
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    ||||||||||| |||||  |  ||| || ||||||| ||||||||||| ||| ||||| |  ||||||  ||||||| ||||||||||||||||||||||    
T  9119213 agaatgctaaatagtgctctaaaggtatcggttaagcaaccaaaacaagtaatttttttattaaaagtagtgtaattgttacttaatcaaaagtcaaaac 9119312  T
Q  168 ttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||| |  |||||||| |||||||||||||| |||| |||||    
T  9119313 ttatattttcaccacaaattttctatttatagattctttaaccattg 9119359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 51100106 - 51100021
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||| || | |||||| ||||||||||||||||||| |||||    
T  51100106 aaaaagtagtgtaattattacttaatcaaaagttaaaacttatattttcaaaataaattttctatttatagattccttaaccattg 51100021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 5645764 - 5645657
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaactt-atatttttaagacaaatttcc 190  Q
    |||||| |||||| ||| ||||||| |||||||||| |||||||  ||||||||||| |||||||||||||||||||| || |||| ||||||||||| |    
T  5645764 ggcatttgttaag-aactaaaacaaataactttttataaaaagtagtgtaattattatttaatcaaaagtcaaaacttaattttttcaagacaaattttc 5645666  T
Q  191 tatttatag 199  Q
    |||||||||    
T  5645665 tatttatag 5645657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 4860143 - 4860234
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||  |||||||| ||||    
T  4860143 tttttataaaaaaggatgtaattattacttaatcaaaagtcaaaacttatattttcaaaacaaattttctatttgtaatttccttaaccatt 4860234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 37461881 - 37461778
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    ||||||||||| ||  |||| || |||||||||| |||||||| ||||||||||||||||| |||| |||||| |||||||||||| || ||||| ||||    
T  37461881 cattggttaagcaattaaaataagtaactttttataaaaagtggtgtaattattacttaattaaaaatcaaaatttatatttttaaaac-aattttctat 37461783  T
Q  194 ttata 198  Q
    |||||    
T  37461782 ttata 37461778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 32325057 - 32325116
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaattt 188  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  32325057 aaaaagtggtgtaattattacttaatcaaaagtcaaaaattatattttcaagacaaattt 32325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 50101381 - 50101287
Alignment:
Q  109 caaaacaattaactttttagaaaaag-tgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagatt 202  Q
    |||||||| ||| |||||| |||||  |||| |||||| || |||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  50101381 caaaacaaataattttttataaaaaaatgatataattaatatttaatcaaaaatcaaaacttatatttttaagacaaattttttatttatagatt 50101287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 14347191 - 14347124
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  14347191 taattattacttaatcaaaaatcaaaacttatatttttaagataaattt-ttatttatagtttccttaa 14347124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 20775069 - 20775189
Alignment:
Q  94 cattggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttccta 192  Q
    ||||||||||| | ||||||||| ||| |||||| |||||||| ||||||| |||| || ||||||| | | | ||||||||| ||||||||||||  ||    
T  20775069 cattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaatttttta 20775168  T
Q  193 tttatagattccttaatcatt 213  Q
    ||||||||||| |||| ||||    
T  20775169 tttatagattcattaaccatt 20775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 37992868 - 37992958
Alignment:
Q  109 caaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagatt 202  Q
    |||||||| ||||||||||  |||||| |||||||||   ||||||||||| |||||| ||||||||| || |||||| | |||||||||||||    
T  37992868 caaaacaagtaactttttattaaaagtaatgtaatta---cttaatcaaaaatcaaaatttatattttcaaaacaaatcttctatttatagatt 37992958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 34236175 - 34236299
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaacttttt--agaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    ||||||||||||  ||||||||||| ||| |||||  | ||||| |  ||||||||| |||||||||||||| ||| |||||||||| | |||||||||     
T  34236175 ggcattggttaaacaaccaaaacaagtaattttttttataaaaaatagtgtaattatcacttaatcaaaagttaaa-cttatattttcaggacaaatttt 34236273  T
Q  190 ctatttatagattccttaatcattgt 215  Q
     ||||||||| ||| |||| ||||||    
T  34236274 ttatttatagtttctttaaccattgt 34236299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 40298015 - 40298089
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||| |||||||||||| |||||||||||||||| || | |||||| |||||||||| ||| |||| |||||    
T  40298015 taattatcacttaatcaaaaatcaaaacttatattttcaaaataaattttctatttatagtttcattaaccattg 40298089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 32653931 - 32653879
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaaga 181  Q
    ||||| |||||||||||||||||| |||||||| |||| ||||||||||||||    
T  32653931 aaaaaatgatgtaattattacttattcaaaagttaaaatttatatttttaaga 32653879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 32544060 - 32543983
Alignment:
Q  130 aaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||||||||| ||||| | ||||||||| |||| |||||||||   |||||||||  ||||||||||||||||||    
T  32544060 aaaagtgatgtaatcattacctgatcaaaagt-aaaatttatattttctcgacaaattttttatttatagattccttaa 32543983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 32651999 - 32651953
Alignment:
Q  135 tgatgtaattattacttaatcaaaagtcaaaacttatatttttaaga 181  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||    
T  32651999 tgatgtaattattacttattcaaaagttaaaatttatatttttaaga 32651953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 48524493 - 48524640
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaag-tgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||| ||||| ||||||||||| |||||||||| |||||  |  ||||||||| |  |||  |||| ||||||||||||||||  | ||||||||  |||    
T  48524493 attgattaagcaaccaaaacaagtaactttttataaaaaaattgtgtaattatga--taaaaaaaaatcaaaacttatattttctatacaaattttttat 48524590  T
Q  194 ttatagattccttaatcattg-tctgagaacaccggttagcaagactctt 242  Q
    |||||| || ||||||||||| ||||||  ||| |||||| |||||||||    
T  48524591 ttatagtttgcttaatcattgttctgagggcactggttagtaagactctt 48524640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 31089572 - 31089511
Alignment:
Q  153 atcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||| | | ||||||||||| ||||||| ||  ||||||||||||||||||||||||    
T  31089572 atcaaaagtaacatcttatattttttagacaaaatttttatttatagattccttaatcattg 31089511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 22812187 - 22812064
Alignment:
Q  91 aggcattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattactt-aatcaaaagtcaaaacttatatttttaagacaaatttc 189  Q
    |||||||| ||||| ||  |||||||  ||||||||| |||||||    |||||||||||| ||| ||| |||||||||||||||||||| | |||| |     
T  22812187 aggcattgattaagcaattaaaacaagcaactttttataaaaagttggataattattacttgaatgaaacgtcaaaacttatatttttaaaataaatatt 22812088  T
Q  190 ctatttatagattccttaatcatt 213  Q
    ||||||| || ||| |||| ||||    
T  22812087 ctatttacagtttctttaaccatt 22812064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 31647754 - 31647841
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    ||||||| ||||||||||||||| || |||||| | |  |||||||| ||||||| |  | |||||||||||||| ||||||| ||||    
T  31647754 aaaaagtaatgtaattattacttgataaaaagtgatagtttatatttctaagacagaaattctatttatagattctttaatcagtgtc 31647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 21762093 - 21762176
Alignment:
Q  130 aaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgt 215  Q
    |||| |||| ||||||||| |||||||||||| |||| |||||  ||||||||||||||  ||||||||  ||| |||| ||||||    
T  21762093 aaaaatgatataattattatttaatcaaaagttaaaatttata--tttaagacaaattttttatttataatttctttaaccattgt 21762176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 22611967 - 22611893
Alignment:
Q  139 gtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    ||||| ||||||| ||| ||||| | | ||||||||||||||||||| ||  ||||| |||||| ||||||||||    
T  22611967 gtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttatatttgtagatttcttaatcatt 22611893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 30694258 - 30694395
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaactttttagaaaa-agtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    ||||||||||||||||||     || |||||||| | ||||||||||| ||| |||| | |||| || | | |||||||||||| |||||||   | |||    
T  30694258 agaatgctaaagagtgccccaagggaattggttatgcaaccaaaacaagtaagttttcacaaaacagaggtataattattacttgatcaaaa---acaac 30694354  T
Q  168 ttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    ||||||||| |||||||| || |||||||| | ||||||||    
T  30694355 ttatattttcaagacaaaatttctatttatggtttccttaa 30694395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 12094969 - 12095070
Alignment:
Q  108 ccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattcctt 206  Q
    |||||| || ||| |||||| ||||||||  |||||| ||||||| ||||||||| | | |||||||||| ||  |||| || |||||| ||||||||||    
T  12094969 ccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttctatttgtagattcctt 12095068  T
Q  207 aa 208  Q
    ||    
T  12095069 aa 12095070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 35808621 - 35808568
Alignment:
Q  94 cattggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattatt 147  Q
    ||||||||||| |||||||| || |||||||||| |||||||  ||||||||||    
T  35808621 cattggttaagcaaccaaaataagtaactttttataaaaagttgtgtaattatt 35808568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 28668451 - 28668388
Alignment:
Q  178 aagacaaatttcctatttatagattccttaa--tcattgtctgagaacaccggttagcaagact 239  Q
    ||||||||||| |||||||||||||||||||   ||||  |||||| ||||||||| |||||||    
T  28668451 aagacaaattttctatttatagattccttaaccacattacctgagagcaccggttatcaagact 28668388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 41142374 - 41142318
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaa 185  Q
    ||||||| |||||||||||| |||||||||||| | | ||||| |||| ||||||||    
T  41142374 aaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagacaaa 41142318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 48400920 - 48400996
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatag-attccttaatcatt 213  Q
    |||| |||||||||||| ||| || |||| ||||||||| || ||||||||  |||||||||  |||||||||||||    
T  48400920 tgtagttattacttaattaaatgttaaaatttatattttcaaaacaaattttttatttatagttttccttaatcatt 48400996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 27513 - 27641
Alignment:
Q  111 aaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatc 210  Q
    |||||| |||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| | ||||||||    
T  27513 aaacaagtaactttttataaaaagtagtgtaattattacttaatcaaaagtcaaaacttatattttaaagacaaattttttatttatagttcccttaatc 27612  T
Q  211 attgtc-tgagaacaccggttagcaagac 238  Q
    |||||| ||||  ||| ||||||||||||    
T  27613 attgtcgtgagggcactggttagcaagac 27641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 31160752 - 31160844
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||| |||||    
T  31160752 tttttataaaaagtgatgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctatttatattttccttaaccattg 31160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 34382733 - 34382628
Alignment:
Q  109 caaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||| |||||||||| |||||||  ||||||||||  |||||||||| | ||||||||||||||||||| ||||||  ||||||||| || |||||    
T  34382733 caaaacaagtaactttttataaaaagttgtgtaattattgtttaatcaaaaattaaaacttatatttttaagataaattttttatttatagttttcttaa 34382634  T
Q  209 tcattg 214  Q
    ||||||    
T  34382633 tcattg 34382628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 28490736 - 28490665
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||| |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  28490736 tttttataaaaagttgtgtaattattacttaagcaaaaatcaaaacttatatttttaagacaaattttctat 28490665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 39283717 - 39283788
Alignment:
Q  143 ttattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||| |||| |||||    
T  39283717 ttattacttaatcaaaaatcaaaacttatatttttaagataaattttctatttatagtttcattaaccattg 39283788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 11065936 - 11065862
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||  || |||||| |||||||| |||||    
T  11065936 taattattacttaatcaaaagtcaaaacttatattttcaagagaaattttataattatagtttccttaaccattg 11065862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 13969214 - 13969100
Alignment:
Q  95 attggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||||||| ||||||||||| ||| |||||| |||||| |  |||||| |||||||||| |||||| | |  ||||||||| |||||||| || ||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttctat 13969115  T
Q  194 ttatagattccttaa 208  Q
    || ||||||||||||    
T  13969114 ttgtagattccttaa 13969100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 45439051 - 45438985
Alignment:
Q  122 tttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaattt 188  Q
    |||||| ||||||||||| |||||| ||||||| |||||| ||||||||||||||||||| ||||||    
T  45439051 tttttataaaaagtgatgcaattatgacttaattaaaagttaaaacttatatttttaagataaattt 45438985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 50015893 - 50015771
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcc 190  Q
    ||||||| ||||||| ||||||||| ||| |||||| ||||||||  | ||||  || ||| ||||||||| | | | ||||||||||||||||| ||||    
T  50015893 ggcattgtttaagtatccaaaacaaataaatttttatgaaaaagttgtataatcgttgcttgatcaaaagtaatatcatatatttttaagacaaaattcc 50015794  T
Q  191 tatttatagattccttaatcatt 213  Q
    |||||  ||||||||||||||||    
T  50015793 tattttgagattccttaatcatt 50015771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 48375268 - 48375353
Alignment:
Q  123 ttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    ||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||  |||||| |||  ||||||||| || |||||    
T  48375268 ttttataaaaagtggtgtaattatcacttaatcaaatgtcaaaacttatattttctagacaatttttatatttatagttttcttaa 48375353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 41936164 - 41936262
Alignment:
Q  119 aactttttagaaaaagtgatgtaattattactt-aatcaaaagtcaaaac---ttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    ||||||||| |||| ||  |||||||||||||| ||||||||||||||||   ||||||||| |||||||||||  ||||||||| ||||| |||||||    
T  41936164 aactttttataaaatgtagtgtaattattactttaatcaaaagtcaaaacaacttatattttcaagacaaattttttatttatagtttcctcaatcatt 41936262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 17995277 - 17995194
Alignment:
Q  101 taagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaa 184  Q
    |||| |||||||||||  |||||| || ||||| ||||||||| ||||||| ||| ||||  ||||||||||||||||||||||    
T  17995277 taagcaaccaaaacaaaaaactttctataaaaactgatgtaataattactttatcgaaagcaaaaacttatatttttaagacaa 17995194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 35876802 - 35876892
Alignment:
Q  149 cttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg-tctgagaacaccggttagcaagac 238  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||| ||  ||  ||||||||||  |||| | ||||||||||||||||    
T  35876802 cttaatcaaaagttaaaacttatatttttaagacaaattttttatttctaatttttttaatcattgccctgaaagcaccggttagcaagac 35876892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 27160371 - 27160335
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatt 174  Q
    |||||||||||||||||||||||||||||||||||||    
T  27160371 tgtaattattacttaatcaaaagtcaaaacttatatt 27160335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 46836188 - 46836288
Alignment:
Q  86 ctttgaggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaa 184  Q
    ||||| ||||||| ||||  || |||||||| ||| ||||| | ||| | |||| ||||||||||||||||| |||||||||| |||||||| |||||||    
T  46836188 ctttggggcattgattaaacaatcaaaacaaataatttttttataaacattgatataattattacttaatcataagtcaaaacctatattttcaagacaa 46836287  T
Q  185 a 185  Q
    |    
T  46836288 a 46836288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 27908952 - 27908999
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttt 176  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||||    
T  27908952 aaaaagttgtgtaattattacttaatcaaaagtcaaaatttatatttt 27908999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 10226543 - 10226458
Alignment:
Q  128 gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    ||||||||  |||||| ||||||| ||||||| | | | |||||||||| |||||||| || |||||| ||||||||||| |||||    
T  10226543 gaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgtagattccttactcatt 10226458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 11449092 - 11449177
Alignment:
Q  128 gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    |||||||| ||||||||||||| | ||||||| | | |  |||||||||||||||||||||  ||||| ||||||| |||| ||||    
T  11449092 gaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatttgtagattctttaaccatt 11449177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 8001818 - 8001742
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||| ||||||| ||||||||| | | |||||||||| |||| ||| || |||||| |||||||||||| |||||    
T  8001818 tgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctatttctagattccttaaccattg 8001742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 40430884 - 40430952
Alignment:
Q  168 ttatatttttaagacaaatttcctatttatagattccttaatcattgt-ctgagaacaccggttagcaa 235  Q
    |||||||||||||| ||||||  ||||| |||| |||||||||||||| || |||||||| ||||||||    
T  40430884 ttatatttttaagataaattttttatttctagaatccttaatcattgtcctaagaacacccgttagcaa 40430952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 33148232 - 33148125
Alignment:
Q  109 caaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattcctta 207  Q
    |||||||| ||| |||||| |||||| |  |||||| ||||||| |||||||||   | ||||||||||||||||||| || | |||| || ||||||||    
T  33148232 caaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttcaatttgtatattcctta 33148133  T
Q  208 atcattgt 215  Q
    | ||||||    
T  33148132 accattgt 33148125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 52762383 - 52762298
Alignment:
Q  131 aaagtgatgtaatt---attacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    ||||||||||||||   ||||||| ||||||||| |||| ||||||||  |||||||| ||  ||||||||||| ||||| |||||    
T  52762383 aaagtgatgtaattattattacttgatcaaaagttaaaatttatatttacaagacaaaatttttatttatagataccttagtcatt 52762298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 26890183 - 26890070
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaa-aagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctat 193  Q
    |||||||||||||||||||||| ||| |||||| |||  |||  |||||||| || ||| |||||||| | ||||| | | ||||||||||| ||  |||    
T  26890183 attggttaagtaaccaaaacaagtaagtttttataaatgagtagtgtaattaatagttagtcaaaagtaacaacttgt-tgtttaagacaaaatttttat 26890085  T
Q  194 ttatagattccttaa 208  Q
    ||||||||| |||||    
T  26890084 ttatagatttcttaa 26890070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 9209273 - 9209346
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    |||||||||||| |||| |||| ||||||  |||||| || |||||  |  |||||||||||||||||||||||    
T  9209273 taattattacttgatcataagttaaaactcttattttcaaaacaaaacttttatttatagattccttaatcatt 9209346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 33827945 - 33827873
Alignment:
Q  89 tgaggcattggttaagtaaccaaaacaattaactttttag-aaaaagtgatgtaattattacttaatcaaaagt 161  Q
    ||||| |||||||||| |||||||  || ||||||||||  ||||||| |||||||||||||||||| ||||||    
T  33827945 tgaggtattggttaag-aaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagt 33827873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 33840020 - 33840092
Alignment:
Q  89 tgaggcattggttaagtaaccaaaacaattaactttttag-aaaaagtgatgtaattattacttaatcaaaagt 161  Q
    ||||| |||||||||| |||||||  || ||||||||||  ||||||| |||||||||||||||||| ||||||    
T  33840020 tgaggtattggttaag-aaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagt 33840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 38597475 - 38597560
Alignment:
Q  92 ggcattggttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttt 176  Q
    ||||||||||||||| ||||||||| ||| |||| |  |||||||  | |||| ||||||||||||||||| | | ||||||||||    
T  38597475 ggcattggttaagtatccaaaacaagtaagttttaataaaaaagttgtctaatcattacttaatcaaaagtgatatcttatatttt 38597560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 47496864 - 47496928
Alignment:
Q  143 ttattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    ||||||||| ||||||| | | ||||||||||||||||| ||| || ||||||||| |||||||||    
T  47496864 ttattacttcatcaaaa-taacaacttatatttttaagataaaatttctatttataaattccttaa 47496928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 30627695 - 30627607
Alignment:
Q  129 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtct 217  Q
    ||||||| ||||||| ||||||| || |||||| | |  ||||||||  |||||| |  | |||||||||||||||||||||| |||||    
T  30627695 aaaaagtaatgtaatcattactttataaaaagtgacaggttatatttccaagacataaattctatttatagattccttaatcagtgtct 30627607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 35873495 - 35873563
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    |||||||||||| || |||||| |||| ||| ||||| |||||||||||  |||||| |||||| ||||    
T  35873495 taattattacttcatgaaaagtaaaaatttacattttgaagacaaattttttatttaaagattctttaa 35873563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 46295982 - 46295866
Alignment:
Q  99 gttaagtaaccaaaacaattaacttttta-gaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttat 197  Q
    |||||| | ||||||||| ||| |||||| ||||||||  ||| || ||||||| ||||||||| | |  ||||||||| |||| ||| ||  ||||| |    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatttttatttgt 46295883  T
Q  198 agattccttaatcattg 214  Q
    ||||||||||| |||||    
T  46295882 agattccttaaccattg 46295866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 17506 - 17646
Alignment:
Q  69 agaatgctaaagagtgcctttgaggcattggttaagtaaccaaaacaattaacttttt-agaaaaagtgatgtaattattacttaatcaaaagtcaaaac 167  Q
    ||||| ||||| | |||| || |||||||||||||  || |||||||| ||||||||| |  |||||| || ||||||||| |||||||||| || ||||    
T  17506 agaatactaaataatgcccttaaggcattggttaaacaatcaaaacaaataacttttttattaaaagtaatataattattaattaatcaaaattcgaaac 17605  T
Q  168 ttatatttttaagacaaatttcctatttatagattccttaa 208  Q
    ||||||||| ||  ||||||| |||||||||||||||||||    
T  17606 ttatattttcaactcaaattttctatttatagattccttaa 17646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 31466 - 31547
Alignment:
Q  95 attggttaagtaaccaaaacaattaactttttagaaaaagtgatgtaattattacttaatcaaaagtcaaaacttatatttt 176  Q
    |||||||||| ||||||||||| |||||||||| |||||    | ||||||||| ||||||||||| |||||||||||||||    
T  31466 attggttaagcaaccaaaacaagtaactttttataaaaaaatttataattattagttaatcaaaaggcaaaacttatatttt 31547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 15421 - 15337
Alignment:
Q  154 tcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgt-ctgagaacaccggttagcaaga 237  Q
    |||||||| | | |||||||||| ||||||||  | ||||||||| |||||||||||||| | |||||| ||| |||||||||||    
T  15421 tcaaaagtaacatcttatattttcaagacaaaaattctatttataaattccttaatcattatcctgagagcactggttagcaaga 15337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 30058 - 29980
Alignment:
Q  138 tgtaattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattgtc 216  Q
    ||||||||||| ||||| |||||| | | |||||||||| || | ||| || |||||| ||||||||||||| ||||||    
T  30058 tgtaattattatttaattaaaagtaacatcttatattttcaaaataaagtttctatttgtagattccttaattattgtc 29980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 12923 - 12996
Alignment:
Q  140 taattattacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcatt 213  Q
    ||||||||||| ||||||||||  ||| |||||||||||| | || ||| |||||||||| ||| |||| ||||    
T  12923 taattattactaaatcaaaagtttaaatttatatttttaaaataatttttctatttatagtttctttaaccatt 12996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 120719 - 120787
Alignment:
Q  146 ttacttaatcaaaagtcaaaacttatatttttaagacaaatttcctatttatagattccttaatcattg 214  Q
    |||||| | ||||||| | | |||||||||| |||||||| || |||||| |||||||||||| |||||    
T  120719 ttactttaccaaaagtgacatcttatattttcaagacaaaatttctatttgtagattccttaaccattg 120787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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