View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0900_low_96 (Length: 216)

Name: NF0900_low_96
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0900_low_96
NF0900_low_96
[»] chr5 (2 HSPs)
chr5 (91-187)||(37337687-37337783)
chr5 (95-187)||(11300389-11300481)
[»] chr6 (1 HSPs)
chr6 (91-187)||(15296509-15296605)
[»] chr4 (1 HSPs)
chr4 (97-187)||(47968302-47968392)
[»] chr1 (1 HSPs)
chr1 (96-187)||(44508976-44509067)
[»] chr8 (1 HSPs)
chr8 (106-165)||(23828780-23828839)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 37337687 - 37337783
Alignment:
Q  91 atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  37337687 atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacatgtatataac 37337783  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 11300481 - 11300389
Alignment:
Q  95 tgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 187  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||| |||||||||| ||||||||||    
T  11300481 tgagaaaatcaaaacttcacctccctatttcaagcatggccgattgttctctcactgcattgctctcctaccattgcctcacgggtatataac 11300389  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 15296509 - 15296605
Alignment:
Q  91 atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 187  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  15296509 atcatgagaaaatcaaaacttcacctccctatttcaagcatgttcgatcgtcctctcactgcatcgctctcctaccattgcctcacaggtatataac 15296605  T

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Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 47968392 - 47968302
Alignment:
Q  97 agaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 187  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  47968392 agaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcggtgcattgctctcctaccattgcctcacaggtatataac 47968302  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 44508976 - 44509067
Alignment:
Q  96 gagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacaattgcctcacaggtatataac 187  Q
    ||||| || |||||||||||||||| | |||||||||| |||||||||||||| ||| |||||||||||| |||||||||||| ||||||||    
T  44508976 gagaacataaaaacttcacctccctgtatcaagcatggccgatcgtcctctcactgctttgctctcctaccattgcctcacagatatataac 44509067  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 23828780 - 23828839
Alignment:
Q  106 aaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctac 165  Q
    |||||| || |||||||||||||||||| | ||||||||| ||  |||||||||||||||    
T  23828780 aaacttaacttccctatttcaagcatggccaatcgtcctcccaccgcattgctctcctac 23828839  T

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