View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903-Insertion-1 (Length: 479)
Name: NF0903-Insertion-1
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Complemental strand, 51804555 - 51804084
Alignment:
| Q |
8 |
gccggtgtatctgtgattttgatttttgtaggtgctgctttgttcttgnnnnnnnggtgtggcaaaaatgtgtctgcggttgaacacgaatacacactct |
107 |
Q |
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| T |
51804555 |
gccggtgtatctgtgattttgatttttgtaggtgctgctttgttcttgaaaaaaaggtgtggcaaaaatgtgtctgcggttgaacacgaatacacactct |
51804456 |
T |
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| Q |
108 |
cttcatcatttttctcttatgatgttaaaagttttcacatgattagttttgatcaaagagagattgttgagtctttggttgataagaatataatgggaca |
207 |
Q |
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| T |
51804455 |
cttcatcatttttctcttatgatgttaagagttttcacatgattagttttgatcaaagagagattgttgagtctttggttgataagaatataatgggaca |
51804356 |
T |
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| Q |
208 |
tggagggtcagggacagtgtacaaaatcgagctgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccagaa |
307 |
Q |
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| T |
51804355 |
tggagggtcagggacagtgtacaaaatcgagctgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccagaa |
51804256 |
T |
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| Q |
308 |
gatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtt |
407 |
Q |
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| T |
51804255 |
gatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtt |
51804156 |
T |
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| Q |
408 |
tggattgtagcttgttggtttatgagtatatgccaaatggtactttgtatgattctcttcataagggttgga |
479 |
Q |
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| T |
51804155 |
tggattgtagcttgttggtttatgagtatatgccaaatggtactttgtatgattctcttcacaagggttgga |
51804084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 479
Target Start/End: Complemental strand, 36578764 - 36578581
Alignment:
| Q |
304 |
agaagatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttgg-aagcataagacacaagaacattgttaagttgta---ttgttgctt |
399 |
Q |
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| T |
36578764 |
agaagataaattatttgcggacaaggcgttgagggcagaggtagagacacttgggaagtataaaacacaagaacatgtttatcttattctgttgttgctt |
36578665 |
T |
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| Q |
400 |
ctcaagtttggattgtagcttgttggttt----atgagtatatgccaaatggtactttgtatgattctcttcataagggttgga |
479 |
Q |
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| T |
36578664 |
ctcaattttggattgtagcttgttggtttgtttatgagtacatgccaaatggtactttatatgattcacttcacaagagttgga |
36578581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 36578938 - 36578825
Alignment:
| Q |
89 |
gaacacgaatacacactctcttcatcatttttctcttatgatgttaaaagttttcacatgattagttttgatcaaagagagattgttgagtctttggttg |
188 |
Q |
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| T |
36578938 |
gaacatgagtacacattctcttcataatttt-ctcgtattatgttaagagctttcacatgataaattttgatcaaaaagagattgttgagtccttgatgg |
36578840 |
T |
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| Q |
189 |
ataagaatataatgg |
203 |
Q |
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| T |
36578839 |
ataagaatattatgg |
36578825 |
T |
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