View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903-Insertion-2 (Length: 115)
Name: NF0903-Insertion-2
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 39940981 - 39941085
Alignment:
| Q |
11 |
gtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttag |
110 |
Q |
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| T |
39940981 |
gtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttag |
39941080 |
T |
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| Q |
111 |
ggttc |
115 |
Q |
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||||| |
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| T |
39941081 |
ggttc |
39941085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 39956662 - 39956731
Alignment:
| Q |
11 |
gtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
80 |
Q |
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| T |
39956662 |
gtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
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Target: chr3 (Bit Score: 68; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 28741952 - 28741849
Alignment:
| Q |
11 |
gtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttag |
110 |
Q |
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|||||| ||||||| || || |||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
28741952 |
gtgagtctcatgttgtcggtaatgttcacgttcattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttag |
28741853 |
T |
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| Q |
111 |
ggtt |
114 |
Q |
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|||| |
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| T |
28741852 |
ggtt |
28741849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 28750795 - 28750694
Alignment:
| Q |
13 |
gagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttaggg |
112 |
Q |
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|||| ||||||| || ||||||||||| || || ||||||||| |||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| |
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| T |
28750795 |
gagtctcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttaggg |
28750696 |
T |
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| Q |
113 |
tt |
114 |
Q |
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|| |
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| T |
28750695 |
tt |
28750694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 7963737 - 7963656
Alignment:
| Q |
30 |
tgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
111 |
Q |
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|||||||||| ||||| ||||||| ||||||||||| ||||||||||||| || |||||||||| |||||||||||||| |
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| T |
7963737 |
tgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 7961212 - 7961143
Alignment:
| Q |
32 |
atgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
101 |
Q |
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|||||||| ||||| ||||||||||| |||||||| ||||| |||||||| || || |||||||| |||| |
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| T |
7961212 |
atgttcacattcatcgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
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