View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0903_high_12 (Length: 338)

Name: NF0903_high_12
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0903_high_12
NF0903_high_12
[»] chr2 (3 HSPs)
chr2 (2-222)||(20268543-20268763)
chr2 (2-222)||(20267460-20267680)
chr2 (66-222)||(33361247-33361403)
[»] chr1 (3 HSPs)
chr1 (65-186)||(49399915-49400036)
chr1 (261-333)||(24129904-24129976)
chr1 (157-224)||(49399796-49399863)
[»] chr4 (2 HSPs)
chr4 (65-187)||(52237948-52238070)
chr4 (166-218)||(52238076-52238128)
[»] chr3 (2 HSPs)
chr3 (65-186)||(44321129-44321249)
chr3 (180-222)||(44321000-44321042)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 20268763 - 20268543
Alignment:
Q  2 gtaaaggaactaatgatatttagcctaatgcattttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacacgg 101  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20268763 gtaaaggaactaatgatatttaccctaatgccttttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacacgg 20268664  T
Q  102 gggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggtga 201  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20268663 gggagataatccacgcaaactcagcctgtttctcaatcacacaaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggtga 20268564  T
Q  202 tgggctgattcatgatgatga 222  Q
    |||||||||||||||||||||    
T  20268563 tgggctgattcatgatgatga 20268543  T

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Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 20267460 - 20267680
Alignment:
Q  2 gtaaaggaactaatgatatttagcctaatgcattttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacacgg 101  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20267460 gtaaaggaactaatgatatttaccctaatgccttttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacacgg 20267559  T
Q  102 gggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggtga 201  Q
    |||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20267560 gggagataatccactctaactcagcctgtttctcaatcacactaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggtga 20267659  T
Q  202 tgggctgattcatgatgatga 222  Q
    |||||||||||||||||||||    
T  20267660 tgggctgattcatgatgatga 20267680  T

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Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 33361247 - 33361403
Alignment:
Q  66 aacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatga 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  33361247 aacaaataaattcagcggttagttttaatgacacgggggagataatccacaccaactcagcctgtttctcaatcacacgaaaacgtcgtcgttgtgatga 33361346  T
Q  166 cggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatgatga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361347 cggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatgatga 33361403  T

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Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 49400036 - 49399915
Alignment:
Q  65 caacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatg 164  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||    
T  49400036 caacaaataaattcagcggttagttttaatgacactggggagataatccacgcaaactcaacctgtttctcaatcacatgaaaacgccgtcgttgtgatg 49399937  T
Q  165 acggccacgatgggctgatttg 186  Q
     | |||||||||||||||||||    
T  49399936 gcagccacgatgggctgatttg 49399915  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 24129976 - 24129904
Alignment:
Q  261 agatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24129976 agatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatat 24129904  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 49399863 - 49399796
Alignment:
Q  157 ttgtgatgacggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatgatgatg 224  Q
    |||| ||| |||| ||||| || ||||||||||  |||||||||||||||||||||||||||||||||    
T  49399863 ttgtaatggcggctacgattggttgatttgtgatggtggcggtgatgggctgattcatgatgatgatg 49399796  T

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Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 52237948 - 52238070
Alignment:
Q  65 caacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatg 164  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||    
T  52237948 caacaaataaattcagcggttagttttaatgacacggggtagataatccacgcaaactcaacctgtttcttaatcacatgaaaacgccgtcgttgtgatg 52238047  T
Q  165 acggccacgatgggctgatttgt 187  Q
     ||||||||||||| ||||||||    
T  52238048 gcggccacgatgggatgatttgt 52238070  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 52238076 - 52238128
Alignment:
Q  166 cggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatg 218  Q
    |||| ||||| || ||||| ||||| |||||||||||||||||||||||||||    
T  52238076 cggctacgattggttgattcgtgacagtggcggtgatgggctgattcatgatg 52238128  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 44321249 - 44321129
Alignment:
Q  65 caacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatg 164  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  44321249 caacaaatcaattaagcggttagttttgatgacacgggggagataatccatgcaaactcaacctgtttctcaatcacatgaaaacgttgtcgttgtgatg 44321150  T
Q  165 acggccacgatgggctgatttg 186  Q
     |||||| ||||||||||||||    
T  44321149 -cggccatgatgggctgatttg 44321129  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 44321042 - 44321000
Alignment:
Q  180 tgatttgtgactgtggcggtgatgggctgattcatgatgatga 222  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  44321042 tgattcgtgacggtggcggtgatgggctgattcatgatgatga 44321000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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