View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0903_high_4 (Length: 410)

Name: NF0903_high_4
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0903_high_4
NF0903_high_4
[»] chr7 (7 HSPs)
chr7 (119-382)||(19160777-19161040)
chr7 (119-382)||(20760176-20760439)
chr7 (59-206)||(21570363-21570511)
chr7 (31-90)||(19160719-19160778)
chr7 (31-90)||(20760118-20760177)
chr7 (31-73)||(19201039-19201081)
chr7 (41-122)||(7211272-7211353)
[»] chr3 (2 HSPs)
chr3 (56-256)||(2872131-2872330)
chr3 (48-181)||(37098205-37098331)
[»] chr8 (3 HSPs)
chr8 (31-128)||(26025428-26025525)
chr8 (40-100)||(13303028-13303087)
chr8 (52-105)||(25114693-25114746)
[»] chr6 (4 HSPs)
chr6 (51-183)||(29410303-29410435)
chr6 (167-201)||(17866422-17866456)
chr6 (167-201)||(17875976-17876010)
chr6 (167-211)||(22792038-22792082)
[»] chr4 (2 HSPs)
chr4 (34-121)||(28011578-28011664)
chr4 (54-105)||(11420346-11420397)
[»] chr2 (5 HSPs)
chr2 (40-121)||(39505096-39505177)
chr2 (31-121)||(23152146-23152236)
chr2 (31-121)||(23563403-23563493)
chr2 (48-120)||(17978891-17978963)
chr2 (59-106)||(7676381-7676428)
[»] chr5 (2 HSPs)
chr5 (42-121)||(25943283-25943362)
chr5 (56-105)||(17460225-17460274)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 119 - 382
Target Start/End: Original strand, 19160777 - 19161040
Alignment:
Q  119 ttgtaattgttagacatattgttagagaggccttagggtgaagcttgtcttgtaacaaagattctaacacagtgaaatccttcacgggatatggaaaaag 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  19160777 ttgtaattgttagacatattgttagagaggccttggggtgaagcttgccttgtaacaaagattctaacatagtgaaatccttcacgggatatggagaaag 19160876  T
Q  219 tggactgcccttaagttagaaggtgaactactataatttatttatgttctttttctcttccccgctccttttatttttccagcattcgttcatactttca 318  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  19160877 tggattgcccttaggttagaaggggaactactataatttatttgtgctctttttctcttccccactccttttatttttccagcattcgttcacactttca 19160976  T
Q  319 tcataactttttagaaaaataaatagaacttaaacttcttttacaaatgtgtaagacaattatt 382  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19160977 tcataaatttttagaaaaataaatagaacttaaacttcttttacaaatgtgtaagacaattatt 19161040  T

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Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 119 - 382
Target Start/End: Original strand, 20760176 - 20760439
Alignment:
Q  119 ttgtaattgttagacatattgttagagaggccttagggtgaagcttgtcttgtaacaaagattctaacacagtgaaatccttcacgggatatggaaaaag 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  20760176 ttgtaattgttagacatattgttagagaggccttggggtgaagcttgccttgtaacaaagattctaacatagtgaaatccttcacgggatatggagaaag 20760275  T
Q  219 tggactgcccttaagttagaaggtgaactactataatttatttatgttctttttctcttccccgctccttttatttttccagcattcgttcatactttca 318  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  20760276 tggattgcccttaggttagaaggggaactactataatttatttgtgctctttttctcttccccactccttttatttttccagcattcgttcacactttca 20760375  T
Q  319 tcataactttttagaaaaataaatagaacttaaacttcttttacaaatgtgtaagacaattatt 382  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20760376 tcataaatttttagaaaaataaatagaacttaaacttcttttacaaatgtgtaagacaattatt 20760439  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 21570511 - 21570363
Alignment:
Q  59 tgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttgtaattgttagacatattgttagagaggccttagggtg 158  Q
    |||||||||||||||||||||||||||||||||||||||||   | || | ||||||||||||||||||||||  | ||||||||| ||||||| |||||    
T  21570511 tgagaatttcatcataggatttggtgaagattcttgttgtagatagagtgaggtgctatcttgtaattgttaggaagattgttagataggccttggggtg 21570412  T
Q  159 aagcttgtcttgtaacaaagattctaacacagtg-aaatccttcacggg 206  Q
    |  |||   || ||||||||||||||||| |||| ||||||||||||||    
T  21570411 agacttactttataacaaagattctaacatagtgaaaatccttcacggg 21570363  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 19160719 - 19160778
Alignment:
Q  31 gatagtgttgtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagatt 90  Q
    |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  19160719 gatagtgttgtgctatcttgtttgtttgtgagaattttattataggatttggtgaagatt 19160778  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 20760118 - 20760177
Alignment:
Q  31 gatagtgttgtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagatt 90  Q
    |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  20760118 gatagtgttgtgctatcttgtttgtttgtgagaattttattataggatttggtgaagatt 20760177  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 19201039 - 19201081
Alignment:
Q  31 gatagtgttgtgctatattgtttgtttgtgagaatttcatcat 73  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  19201039 gatagtgtagtgctatcttgtttgattgtgagaatttcatcat 19201081  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 7211272 - 7211353
Alignment:
Q  41 tgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttgt 122  Q
    |||||| |||||||||||||||||| | |||| | | || | |||||||||||||||||| ||||  || ||| ||||||||    
T  7211272 tgctatcttgtttgtttgtgagaatattatcacaaggttcgatgaagattcttgttgtaaagataatggagtgttatcttgt 7211353  T

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Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 2872330 - 2872131
Alignment:
Q  56 ttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttgtaattgttagacatattgttagagaggccttagg 155  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| ||||  || |||||||||||||||||||||  | ||||||| ||||||||| ||    
T  2872330 ttgtgggaatttcatcatagggtttggtgaagattcttgttgtaaagatattggagtgctatcttgtaattgttaggaagattgttaaagaggccttggg 2872231  T
Q  156 gtgaagcttgtcttgtaacaaagattctaacacagtgaaatccttcacgggatatggaaaaagtggactgcccttaagttagaaggtgaactactataat 255  Q
    |||| | |||  |||||||||| ||||||||| || ||||| ||||| ||| | ||||  ||||||||| |||||| |||| |||| |||| ||||||||    
T  2872230 gtgaggattggtttgtaacaaaaattctaacatagagaaattcttca-ggggtgtggaggaagtggactacccttaggttaaaaggggaaccactataat 2872132  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 37098331 - 37098205
Alignment:
Q  48 ttgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttgtaattgttagacatattgttagagag 147  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||||||||| || || |||||||||||||||| || ||||| | ||||||     |    
T  37098331 ttgtttgtttgtgagaatttcatcagag--ttttgtgaagattcttgttgtaaggacagtggggtgctatcttgtactttttagaaagattgtt-----g 37098239  T
Q  148 gccttagggtgaagcttgtcttgtaacaaagatt 181  Q
    |||||||||| | |||||  ||||||||||||||    
T  37098238 gccttagggtaaggcttgctttgtaacaaagatt 37098205  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 26025525 - 26025428
Alignment:
Q  31 gatagtgttgtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttgtaattgt 128  Q
    |||||||  ||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||| || |||||||||||| |||||    
T  26025525 gatagtgaagtgctatcttgtttgtttgtgagaatttcatcataaggtgtggtgaagattcttgttgtaaagatagtggtgtgctatcttgtgattgt 26025428  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 13303028 - 13303087
Alignment:
Q  40 gtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaa 100  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  13303028 gtgctatcttgtttctttgtgagaatttcatcatagg-tttggtgaagatttttgttgtaa 13303087  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 25114746 - 25114693
Alignment:
Q  52 ttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgata 105  Q
    |||||||||||||||||| |||||  | ||||||||||||||||||||| ||||    
T  25114746 ttgtttgtgagaatttcaacatagagtctggtgaagattcttgttgtaaagata 25114693  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 29410435 - 29410303
Alignment:
Q  51 tttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttgtaattgttagacatattgttagagaggcc 150  Q
    ||||||||||| ||||| |||||||  |||||||||||||  ||||| || ||||| |  |||||||||||||||||||||  | ||||||||||||| |    
T  29410435 tttgtttgtgaaaattttatcatagagtttggtgaagatttatgttgcaaagatagtgaagtgctatcttgtaattgttaggaagattgttagagaggtc 29410336  T
Q  151 ttagggtgaagcttgtcttgtaacaaagattct 183  Q
    || | |||| |||||  ||||||||||||||||    
T  29410335 ttggagtgaggcttgatttgtaacaaagattct 29410303  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 17866422 - 17866456
Alignment:
Q  167 cttgtaacaaagattctaacacagtgaaatccttc 201  Q
    ||||||||||||||||||||| |||||||||||||    
T  17866422 cttgtaacaaagattctaacatagtgaaatccttc 17866456  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 17875976 - 17876010
Alignment:
Q  167 cttgtaacaaagattctaacacagtgaaatccttc 201  Q
    ||||||||||||||||||||| |||||||||||||    
T  17875976 cttgtaacaaagattctaacatagtgaaatccttc 17876010  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 22792038 - 22792082
Alignment:
Q  167 cttgtaacaaagattctaacacagtgaaatccttcacgggatatg 211  Q
    ||||||||||||||| ||||| |||||||||||||| ||| ||||    
T  22792038 cttgtaacaaagattttaacatagtgaaatccttcatggggtatg 22792082  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 28011664 - 28011578
Alignment:
Q  34 agtgttgtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttg 121  Q
    |||| |||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  28011664 agtggtgtgctatcttgtttgtttgtaagaattttatcacagg-tttggtgaagattcttgttgtaaagatagtggggtgctatcttg 28011578  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 11420397 - 11420346
Alignment:
Q  54 gtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgata 105  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  11420397 gtttgtgagaatttcatcatagggttcggtgaagattcttgttgtaatgata 11420346  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 39505177 - 39505096
Alignment:
Q  40 gtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatcttg 121  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||| ||  ||||| ||||||||||||||    
T  39505177 gtgctatcttgtttgtttgtgagaatttcatcctagggtttggtgaatattcttgttatagagatagtggggtgctatcttg 39505096  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 23152236 - 23152146
Alignment:
Q  31 gatagtgttgtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgt-aacgatagaggggtgctatcttg 121  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| || || || ||||||||||||||    
T  23152236 gatagtggtgtgctatcttgcttgtttgtgagaatttcatcatagg-tttggtgaagactcttgttgtaaaagaaagtggggtgctatcttg 23152146  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 23563493 - 23563403
Alignment:
Q  31 gatagtgttgtgctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgt-aacgatagaggggtgctatcttg 121  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| || || || ||||||||||||||    
T  23563493 gatagtggtgtgctatcttgcttgtttgtgagaatttcatcatagg-tttggtgaagactcttgttgtaaaagaaagtggggtgctatcttg 23563403  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 17978963 - 17978891
Alignment:
Q  48 ttgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgatagaggggtgctatctt 120  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| |||||||||  ||||  ||||||||||||    
T  17978963 ttgtttgtttgtgagaatttcatcatagagtttggcgaagatttttgttgtaaatatagtagggtgctatctt 17978891  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 7676381 - 7676428
Alignment:
Q  59 tgagaatttcatcataggatttggtgaagattcttgttgtaacgatag 106  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||    
T  7676381 tgagaatttcatcatagagtttggtgaagattcttgttgtaaagatag 7676428  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 25943283 - 25943362
Alignment:
Q  42 gctatattgtttgtttgtgagaatttcatcataggatttggtgaagattcttgttgt-aacgatagaggggtgctatcttg 121  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||    
T  25943283 gctatcttgtttgtgtgtgagaatttcatcatagg-tttggtgaagattcttgttgtaaaagatagtggggtgctatcttg 25943362  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 17460274 - 17460225
Alignment:
Q  56 ttgtgagaatttcatcataggatttggtgaagattcttgttgtaacgata 105  Q
    ||||| |||||| |||||| | ||||||||||||||||||||||| ||||    
T  17460274 ttgtgtgaattttatcataaggtttggtgaagattcttgttgtaaagata 17460225  T

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