View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0903_low_1 (Length: 724)

Name: NF0903_low_1
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0903_low_1
NF0903_low_1
[»] chr2 (9 HSPs)
chr2 (92-608)||(20268543-20269058)
chr2 (88-608)||(20267161-20267680)
chr2 (1-265)||(33360956-33361222)
chr2 (452-608)||(33361247-33361403)
chr2 (269-315)||(33361197-33361243)
chr2 (92-156)||(41282960-41283024)
chr2 (92-136)||(42148680-42148724)
chr2 (103-191)||(41993318-41993406)
chr2 (90-156)||(41983270-41983336)
[»] chr3 (19 HSPs)
chr3 (92-356)||(44321357-44321625)
chr3 (451-572)||(44321129-44321249)
chr3 (90-202)||(23513686-23513798)
chr3 (91-256)||(23514389-23514555)
chr3 (92-193)||(16436524-16436625)
chr3 (124-194)||(54706952-54707022)
chr3 (85-166)||(3799825-3799905)
chr3 (92-156)||(8923631-8923695)
chr3 (92-156)||(34329132-34329196)
chr3 (91-156)||(41326544-41326609)
chr3 (92-156)||(8922884-8922948)
chr3 (92-156)||(41325822-41325886)
chr3 (97-160)||(40810286-40810349)
chr3 (566-608)||(44321000-44321042)
chr3 (92-154)||(52103608-52103670)
chr3 (95-156)||(1772870-1772931)
chr3 (92-136)||(44312393-44312437)
chr3 (92-156)||(50107568-50107632)
chr3 (214-254)||(54707657-54707695)
[»] chr1 (12 HSPs)
chr1 (91-312)||(49400135-49400356)
chr1 (451-572)||(49399915-49400036)
chr1 (95-202)||(49399549-49399656)
chr1 (647-719)||(24129904-24129976)
chr1 (92-212)||(27891235-27891355)
chr1 (90-193)||(27890566-27890669)
chr1 (543-610)||(49399796-49399863)
chr1 (92-156)||(1764516-1764580)
chr1 (95-136)||(7338012-7338053)
chr1 (92-156)||(49385085-49385149)
chr1 (89-128)||(7338831-7338870)
chr1 (91-156)||(49385787-49385852)
[»] chr4 (15 HSPs)
chr4 (92-312)||(52237635-52237849)
chr4 (451-573)||(52237948-52238070)
chr4 (90-200)||(52238270-52238380)
chr4 (94-202)||(53327458-53327566)
chr4 (92-193)||(55633554-55633655)
chr4 (98-202)||(48957414-48957518)
chr4 (92-156)||(5469968-5470032)
chr4 (131-258)||(53320047-53320174)
chr4 (90-156)||(36386039-36386105)
chr4 (92-196)||(53320685-53320792)
chr4 (552-604)||(52238076-52238128)
chr4 (97-136)||(21857562-21857601)
chr4 (97-136)||(21913425-21913464)
chr4 (98-145)||(45620874-45620921)
chr4 (90-136)||(36385842-36385888)
[»] chr7 (10 HSPs)
chr7 (97-249)||(45431064-45431218)
chr7 (92-236)||(45431736-45431882)
chr7 (92-202)||(32249345-32249455)
chr7 (89-176)||(22492486-22492572)
chr7 (92-156)||(23752803-23752867)
chr7 (92-249)||(32250027-32250185)
chr7 (91-156)||(48204146-48204211)
chr7 (118-203)||(32492585-32492670)
chr7 (92-156)||(43844794-43844858)
chr7 (92-129)||(35753100-35753137)
[»] chr8 (7 HSPs)
chr8 (90-257)||(17626250-17626418)
chr8 (92-194)||(17625634-17625736)
chr8 (91-156)||(38443033-38443098)
chr8 (89-136)||(42578706-42578753)
chr8 (91-136)||(6462640-6462685)
chr8 (91-139)||(38443620-38443668)
chr8 (91-136)||(17938174-17938219)
[»] chr5 (3 HSPs)
chr5 (92-253)||(129260-129423)
chr5 (94-196)||(128663-128765)
chr5 (97-136)||(2639717-2639756)
[»] scaffold0178 (1 HSPs)
scaffold0178 (87-156)||(18476-18545)
[»] chr6 (2 HSPs)
chr6 (93-156)||(28548400-28548463)
chr6 (90-156)||(34260114-34260180)


Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 92 - 608
Target Start/End: Complemental strand, 20269058 - 20268543
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| | ||||||||||||    
T  20269058 gagtccatctttgctccatttacctttgctcaatttatctcatttatcttcatggatgtgcgacacatgttaaaagaatatccaacggttgaaattaaaa 20268959  T
Q  192 agggaaagataaacaaccaca--tgtgattgcttttagaaacacaatctctgtatctttttccagaactgttgcctctctgtatctttttccagaactga 289  Q
    |||||||||||||||| ||||  | ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  20268958 agggaaagataaacaaacacacatatgattgcttttagaaacacaatctct--atctttttccagaactgttggctctctgtatctttttccagaactga 20268861  T
Q  290 tgcctatttcaaaatagaagaagtttgaaaattgaactaatgatattcttacccaacaattataattnnnnnnnntctaaaacaaaacttattctgttgt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||    
T  20268860 tgcctatttcaaaatagaagaagtttgaaaattgaactaatgatattcttacccaacaattataattaaaaaaa-tctaaaacaaaacttattctgtcgt 20268762  T
Q  390 aaaggaactaatgatatttatcctaatgcattttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacacgggg 489  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20268761 aaaggaactaatgatatttaccctaatgccttttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacacgggg 20268662  T
Q  490 gagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggtgatg 589  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20268661 gagataatccacgcaaactcagcctgtttctcaatcacacaaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggtgatg 20268562  T
Q  590 ggctgattcatgatgatga 608  Q
    |||||||||||||||||||    
T  20268561 ggctgattcatgatgatga 20268543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 88 - 608
Target Start/End: Original strand, 20267161 - 20267680
Alignment:
Q  88 ttatgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaatt 187  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  20267161 ttatgagtccatctttgctccatttacctttgctcaatttatctcatttatcttcatggatgtgcgacacatgttaaaagaatatccaacggttgaaatt 20267260  T
Q  188 aaaaagggaaagataaacaaccaca--tgtgattgcttttagaaacacaatctctgtatctttttccagaactgttgcctctctgtatctttttccagaa 285  Q
    |||||||||||||||||||| ||||  | ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  20267261 aaaaagggaaagataaacaaacacacatatgattgcttttagaaacacaatctct--atctttttccagaactgttggctctctgtatctttttccagaa 20267358  T
Q  286 ctgatgcctatttcaaaatagaagaagtttgaaaattgaactaatgatattcttacccaacaattataattnnnnnnnntctaaaacaaaacttattctg 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  20267359 ctgatgcctatttcaaaatagaagaagtttgaaaattgaactaatgatattcttacccaacaattataattaaaaaag-tctaaaacaaaacttattctg 20267457  T
Q  386 ttgtaaaggaactaatgatatttatcctaatgcattttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacac 485  Q
    | |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20267458 tcgtaaaggaactaatgatatttaccctaatgccttttaattccattgcattgtccatgtgcaagcaacaaataaattcagcggttagttttaatgacac 20267557  T
Q  486 gggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggt 585  Q
    |||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20267558 gggggagataatccactctaactcagcctgtttctcaatcacactaaaacgtcgtcgttgtgatgacggccacgatgggctgatttgtgactgtggcggt 20267657  T
Q  586 gatgggctgattcatgatgatga 608  Q
    |||||||||||||||||||||||    
T  20267658 gatgggctgattcatgatgatga 20267680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 33360956 - 33361222
Alignment:
Q  1 aggctatgtgagttgtgttgtgggagcaacttgggagtggaatggtgtttatggctggtgatagtttttaggattttcaagtataatttatgagtccatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33360956 aggctatgtgagttgtgttgtgggagcaacttgggagtggaatggtgtttatggctggtgatagtttttaggattttcaagtataatttatgagtccatc 33361055  T
Q  101 tttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaagggaaaga 200  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||    
T  33361056 tttgctccatttacctttgctcaatttataccatttaccttcatggatgtgtgacacatgttaaaagaatatccaacggttgaaattaaaaagggaaaga 33361155  T
Q  201 taaacaa--ccacatgtgattgcttttagaaacacaatctctgtatctttttccagaactgttgcct 265  Q
    |||||||   |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  33361156 taaacaaacacacatgcgattggttttagaaacacaatctttgtatctttttccagaactgatgcct 33361222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 452 - 608
Target Start/End: Original strand, 33361247 - 33361403
Alignment:
Q  452 aacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatga 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  33361247 aacaaataaattcagcggttagttttaatgacacgggggagataatccacaccaactcagcctgtttctcaatcacacgaaaacgtcgtcgttgtgatga 33361346  T
Q  552 cggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatgatga 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361347 cggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatgatga 33361403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 33361197 - 33361243
Alignment:
Q  269 tgtatctttttccagaactgatgcctatttcaaaatagaagaagttt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33361197 tgtatctttttccagaactgatgcctatttcaaaatagaagaagttt 33361243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 41283024 - 41282960
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||||||||| |||||||||  |||||||||||||   |||||||| ||||||||||||||||    
T  41283024 gagtccatctttactccatttaagtttgctcaatttacatcatttaccatcatggatgtgtgaca 41282960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 42148680 - 42148724
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  42148680 gagtccatctttgctccatttatgttttctcaatttatcccattt 42148724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 41993406 - 41993318
Alignment:
Q  103 tgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||||||||| |||  ||| ||||| |||||||||||| ||||||||||||||  ||  |||||| ||||||| | |||| |||||||    
T  41993406 tgctccatttaccttaactccatttaccccatttacctttatggatgtgtgacatgtgacaaaatagtatccaacggttgacattaaaa 41993318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 41983336 - 41983270
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||| ||||||||||||||||| |   |||||||||||||| ||| ||||||  |||||||||||    
T  41983336 atgagtgcatctttgctccatttaccaaggctcaatttatcccttttcccttcacagatgtgtgaca 41983270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 4e-77; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 92 - 356
Target Start/End: Complemental strand, 44321625 - 44321357
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    |||||||||||||||||||||   ||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  44321625 gagtccatctttgctccatttgcttttgctcaattta-cccatttaccttcattgatgtgtgacacgtgttaaaagaatattcaatggttgaaattaaaa 44321527  T
Q  192 agggaaagataaacaa--ccacatgtgattgcttttagaaacac-aatctctgtatc-tttttccagaactgttgcctctctgtatctttttccagaact 287  Q
    ||| ||||||||||||   ||||||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||  |||||     
T  44321526 aggaaaagataaacaaacacacatgtcattgcttttagaaacacaaatctctggatcttttttccagaagtgttgcctctctgtatctttttatagaacc 44321427  T
Q  288 gatgcctatttc-aaaatagaagaagtttgaaaattgaactaatgatattcttacccaacaattataatt 356  Q
    ||||||| |||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  44321426 gatgcctgtttcaaaaatagaagaagcttgaaagttgaactcatgatattcttacccaacaattataatt 44321357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 451 - 572
Target Start/End: Complemental strand, 44321249 - 44321129
Alignment:
Q  451 caacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatg 550  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  44321249 caacaaatcaattaagcggttagttttgatgacacgggggagataatccatgcaaactcaacctgtttctcaatcacatgaaaacgttgtcgttgtgatg 44321150  T
Q  551 acggccacgatgggctgatttg 572  Q
     |||||| ||||||||||||||    
T  44321149 -cggccatgatgggctgatttg 44321129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 23513686 - 23513798
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||| ||| |||  |||||| |||| ||||||||||    
T  23513686 atgagtccatctttgctccatttatctttgctcaatttatcccatttatcatcatggatgcatgacacgtgtcaaaggaatatctaatggttgaaattaa 23513785  T
Q  190 aaagggaaagata 202  Q
    ||||||| |||||    
T  23513786 aaagggagagata 23513798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 23514555 - 23514389
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaa 190  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||  ||||||||||||||||  ||  |||| |||||| || | ||||||| |||    
T  23514555 tgagtccatctttgctccatttgcctttgctcaatttaccccatttactatcatggatgtgtgacatgtggcaaaaaaatatctaacggttgaaataaaa 23514456  T
Q  191 aagggaaagataaacaa--ccacatgtgattgcttttagaaacacaatctctgtatctttttccagaa 256  Q
    |||| ||  ||||||||   |||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  23514455 aaggcaacaataaacaaacacacatgtgattgcttttagaaacaaaatctctatat-tttttccagaa 23514389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 16436524 - 16436625
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||||| |||  |||||| |||| || | ||||||||||||    
T  16436524 gagtccatctttgctccgtttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatagtatcaaacggttgaaattaaaa 16436623  T
Q  192 ag 193  Q
    ||    
T  16436624 ag 16436625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 54706952 - 54707022
Alignment:
Q  124 atttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaagg 194  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  54706952 atttatcccatttacgatcatggatgtgtgacacatgtcaaaataatatccaacggttgaaattaaaaagg 54707022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 3799825 - 3799905
Alignment:
Q  85 aatttatgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaa 166  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||||||   | ||| ||||||||||||||| |||||    
T  3799825 aatttaggagtccatctttgctccatttagctt-gctcaatttatcccattttaatgcatagatgtgtgacacatggtaaaa 3799905  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 8923695 - 8923631
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||||||||||||||||||   ||||||| ||||| |||||||||| ||||||||||||||||    
T  8923695 gagtccatctttgctccatttgggtttgctccatttaccccatttaccatcatggatgtgtgaca 8923631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 34329196 - 34329132
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||||||| ||||||| |||||||||||||  ||||||||  ||||||||||||||||    
T  34329196 gagtccatctttgcttcatttatttttgctcaatttactccatttactatcatggatgtgtgaca 34329132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 41326609 - 41326544
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||||||||||||||   ||||||| ||||| || ||||||| ||||||||||||||||    
T  41326609 tgagtccatctttgctccatttgggtttgctccatttacccaatttaccatcatggatgtgtgaca 41326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 8922884 - 8922948
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||| ||||||| |||||||||  ||||||||||||| |||||||| | ||||||||||||||||    
T  8922884 gagttcatctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgaca 8922948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 41325822 - 41325886
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||| ||||||| |||||||||  ||||||||||||| |||||||| | ||||||||||||||||    
T  41325822 gagttcatctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgaca 41325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 40810349 - 40810286
Alignment:
Q  97 catctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatg 160  Q
    |||||||||||||||||  ||| |||||||||||||||||    ||||||||||||||||||||    
T  40810349 catctttgctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatg 40810286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 608
Target Start/End: Complemental strand, 44321042 - 44321000
Alignment:
Q  566 tgatttgtgactgtggcggtgatgggctgattcatgatgatga 608  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  44321042 tgattcgtgacggtggcggtgatgggctgattcatgatgatga 44321000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 52103608 - 52103670
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtga 154  Q
    ||||||||||||||| ||||||  ||||||| ||||| |||||||||  ||||||||||||||    
T  52103608 gagtccatctttgcttcatttaggtttgctccatttaccccatttactatcatggatgtgtga 52103670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 1772870 - 1772931
Alignment:
Q  95 tccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||| |||||||||||||  ||||||||||||| |||||||||  |||||||| |||||||    
T  1772870 tccatatttgctccatttaagtttgctcaatttaccccatttactatcatggatatgtgaca 1772931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 44312437 - 44312393
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaatttaccccattt 44312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 50107568 - 50107632
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||| ||||||| || ||||||  ||||||||||||| |||||||| | ||||||||||||||||    
T  50107568 gagttcatctttactacatttaggtttgctcaatttaccccatttatcatcatggatgtgtgaca 50107632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 54707695 - 54707657
Alignment:
Q  214 gtgattgcttttagaaacacaatctctgtatctttttccag 254  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  54707695 gtgattgcttttagaaacacaatctc--tatctttttccag 54707657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 5e-64; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 91 - 312
Target Start/End: Complemental strand, 49400356 - 49400135
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaa 190  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||    
T  49400356 tgagtccatctttgctccatttgcctttgctcaatttatcccatttaccttcatgcatgtgtgacacatgttaaaagaatatccaacggttgaaattaaa 49400257  T
Q  191 aagggaaagataaacaacca--catgtgattgcttttagaaacacaatctctgtatctttttccagaactgttgcctctctgtatctttttccagaactg 288  Q
    || |||||||||||||| ||  |||||||||  || ||||||||| | |||||||| |||||||||| |||||||||||||||||  ||||||| |||||    
T  49400256 aaaggaaagataaacaaacacgcatgtgattaattctagaaacacgacctctgtat-tttttccagatctgttgcctctctgtat-attttccataactg 49400159  T
Q  289 atgcctatttcaaaatagaagaag 312  Q
    |||| |||||||||||| ||||||    
T  49400158 atgcatatttcaaaatataagaag 49400135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 451 - 572
Target Start/End: Complemental strand, 49400036 - 49399915
Alignment:
Q  451 caacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatg 550  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||    
T  49400036 caacaaataaattcagcggttagttttaatgacactggggagataatccacgcaaactcaacctgtttctcaatcacatgaaaacgccgtcgttgtgatg 49399937  T
Q  551 acggccacgatgggctgatttg 572  Q
     | |||||||||||||||||||    
T  49399936 gcagccacgatgggctgatttg 49399915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 49399549 - 49399656
Alignment:
Q  95 tccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaagg 194  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  49399549 tccatctttgctccatttgcctttgctcaatttaccccatttaccttgatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagg 49399648  T
Q  195 gaaagata 202  Q
    ||||||||    
T  49399649 gaaagata 49399656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 647 - 719
Target Start/End: Complemental strand, 24129976 - 24129904
Alignment:
Q  647 agatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatat 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24129976 agatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatat 24129904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 27891355 - 27891235
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |||||  ||  |||||| ||||||| | ||||||||||||    
T  27891355 gagtccatctttgctccatttatctttactcaatttatcccatttaccaacatggatgtctgacatgtggcaaaatagtatccaacgattgaaattaaaa 27891256  T
Q  192 agggaaagataaacaaccaca 212  Q
     || ||  |||||||| ||||    
T  27891255 gggcaataataaacaaacaca 27891235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 27890566 - 27890669
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaa 189  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||||||||  ||  |||||| |||| || | ||||||||||    
T  27890566 atgagtccatctttgctccatttgcctttgctcaatttatcctatttaccatcatggatgtgtgacatgtggcaaaatagtatcaaacggttgaaattaa 27890665  T
Q  190 aaag 193  Q
    ||||    
T  27890666 aaag 27890669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 543 - 610
Target Start/End: Complemental strand, 49399863 - 49399796
Alignment:
Q  543 ttgtgatgacggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatgatgatg 610  Q
    |||| ||| |||| ||||| || ||||||||||  |||||||||||||||||||||||||||||||||    
T  49399863 ttgtaatggcggctacgattggttgatttgtgatggtggcggtgatgggctgattcatgatgatgatg 49399796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 1764516 - 1764580
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||||||||||||||  ||||||||||||| || ||||| | |||||||||| |||||    
T  1764516 gagtccatctttgctccatttaagtttgctcaatttaccctatttatcatcatggatgtatgaca 1764580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 7338012 - 7338053
Alignment:
Q  95 tccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  7338012 tccatctttgctccatttatattttctcaatttatcccattt 7338053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 49385085 - 49385149
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||||||||||||||  |||||   ||||| |||||||||  ||||||||||||||||    
T  49385085 gagtccatctttgctccatttaagtttgcatcatttaccccatttacaatcatggatgtgtgaca 49385149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 7338870 - 7338831
Alignment:
Q  89 tatgagtccatctttgctccatttatctttgctcaattta 128  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  7338870 tatgagtccatctttgctccatttatgtttcctcaattta 7338831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 49385852 - 49385787
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||||||||| |||||   |||| | ||||| |||||||||| |||||||| |||||||    
T  49385852 tgagtccatctttgctcaatttaggattgcaccatttaccccatttaccatcatggatatgtgaca 49385787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 52237635 - 52237849
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  52237635 gagtctatctttgctccatttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacatgttaaaagaatatccaacagttgaaattaaaa 52237734  T
Q  192 agggaaagataaacaa--ccacatgtgattgcttttagaaacacaatctctgtatctttttccagaactgttgcctctctgtatctttttccagaactga 289  Q
    | ||||||||||||||   ||||||||||| |||||||||||||||||||||||| ||||||||||    ||||  |||||||| |||||||| ||||||    
T  52237735 a-ggaaagataaacaaacacacatgtgattacttttagaaacacaatctctgtat-tttttccaga----ttgc--ctctgtatatttttccataactga 52237826  T
Q  290 tgcctatttcaaaatagaagaag 312  Q
    ||| |||||||||||||||||||    
T  52237827 tgcatatttcaaaatagaagaag 52237849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 451 - 573
Target Start/End: Original strand, 52237948 - 52238070
Alignment:
Q  451 caacaaataaattcagcggttagttttaatgacacgggggagataatccacgcaaactcagcctatttctcaatcacacgaaaacgtcgtcgttgtgatg 550  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||    
T  52237948 caacaaataaattcagcggttagttttaatgacacggggtagataatccacgcaaactcaacctgtttcttaatcacatgaaaacgccgtcgttgtgatg 52238047  T
Q  551 acggccacgatgggctgatttgt 573  Q
     ||||||||||||| ||||||||    
T  52238048 gcggccacgatgggatgatttgt 52238070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 52238380 - 52238270
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaa 189  Q
    ||||||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  52238380 atgagtccatctttgcttcatttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaa 52238281  T
Q  190 aaagggaaaga 200  Q
    |||||||||||    
T  52238280 aaagggaaaga 52238270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 53327458 - 53327566
Alignment:
Q  94 gtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaag 193  Q
    ||||||||||||||||||||  | ||||  ||||||| |||||||||||| ||||||||||||  |||||||| ||||||||||| ||||||||||||||    
T  53327458 gtccatctttgctccatttagatatgcttcatttatctcatttaccttcacggatgtgtgacatttgttaaaagaatatccaatggttgaaattaaaaag 53327557  T
Q  194 ggaaagata 202  Q
    |||||||||    
T  53327558 ggaaagata 53327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 55633554 - 55633655
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||||| |||  |||||| |||| || | ||||||||||||    
T  55633554 gagtccatctttgctccgtttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatagtatcaaacggttgaaattaaaa 55633653  T
Q  192 ag 193  Q
    ||    
T  55633654 ag 55633655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 48957518 - 48957414
Alignment:
Q  98 atctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaagggaa 197  Q
    ||||||||| ||||||  | ||||| ||||| |||||||||||||| ||||||| ||||  |||||||| ||||||||||| ||||||||||||||||||    
T  48957518 atctttgcttcatttagatatgctccatttaacccatttaccttcacggatgtgcgacatgtgttaaaagaatatccaatggttgaaattaaaaagggaa 48957419  T
Q  198 agata 202  Q
    |||||    
T  48957418 agata 48957414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 5470032 - 5469968
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||||||    
T  5470032 gagtccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgaca 5469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 53320047 - 53320174
Alignment:
Q  131 ccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaagggaaagataaacaaccaca--tgtgattgcttttaga 228  Q
    ||||||||| ||||  ||||||||||| || || ||||||||||||   ||||||| ||||||  ||  |||||||| ||||  ||||||||||||||||    
T  53320047 ccatttaccatcat--atgtgtgacacgtggtataataatatccaacagttgaaataaaaaagacaacaataaacaaacacacatgtgattgcttttaga 53320144  T
Q  229 aacacaatctctgtatctttttccagaact 258  Q
    |||||||||||  |||||||||||||||||    
T  53320145 aacacaatctccatatctttttccagaact 53320174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 36386105 - 36386039
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||| ||||||||||||||||  |||||||||||||| |||||||    ||||||||||||||||    
T  36386105 atgagtgcatctttgctccatttcactttgctcaatttaccccatttctagtcatggatgtgtgaca 36386039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 53320792 - 53320685
Alignment:
Q  92 gagtccatctttgctccatttat-ctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaa---taatatccaatgtttgaaatt 187  Q
    ||||||||||||||||| ||||  ||| | ||| |||| | |||||||||||||||||||| ||||| ||| ||||   |||||| ||||| ||||||||    
T  53320792 gagtccatctttgctccttttaggcttggatca-tttacctcatttaccttcatggatgtgcgacacgtgtaaaaaaaataatattcaatggttgaaatt 53320694  T
Q  188 aaaaaggga 196  Q
    |||||||||    
T  53320693 aaaaaggga 53320685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 52238076 - 52238128
Alignment:
Q  552 cggccacgatgggctgatttgtgactgtggcggtgatgggctgattcatgatg 604  Q
    |||| ||||| || ||||| ||||| |||||||||||||||||||||||||||    
T  52238076 cggctacgattggttgattcgtgacagtggcggtgatgggctgattcatgatg 52238128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 21857601 - 21857562
Alignment:
Q  97 catctttgctccatttatctttgctcaatttatcccattt 136  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  21857601 catctttgctccatttacctttcctcaatttatcccattt 21857562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 21913464 - 21913425
Alignment:
Q  97 catctttgctccatttatctttgctcaatttatcccattt 136  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  21913464 catctttgctccatttacctttcctcaatttatcccattt 21913425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 45620874 - 45620921
Alignment:
Q  98 atctttgctccatttatctttgctcaatttatcccatttaccttcatg 145  Q
    ||||||||||||||||  ||||||||||||||| |||||||| |||||    
T  45620874 atctttgctccatttaaatttgctcaatttatctcatttaccatcatg 45620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 36385888 - 36385842
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    |||||| ||||||||||||||||  |||||||||||||| |||||||    
T  36385888 atgagtgcatctttgctccatttcactttgctcaatttaccccattt 36385842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 45431064 - 45431218
Alignment:
Q  97 catctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaaggga 196  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||| ||||||| |    
T  45431064 catctttgctccatttgtctttgctcaatttatcccatttaccatcatggatgtgtgacacgtgttaaaataatatccaacggttgaaataaaaaaggca 45431163  T
Q  197 aagataaacaacca--catgtgattgcttttagaaacacaatctctgtatctttt 249  Q
    |  |||||||| ||  ||||||||||||||||||||||||||||| |||||||||    
T  45431164 acaataaacaaacacccatgtgattgcttttagaaacacaatctcagtatctttt 45431218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 45431882 - 45431736
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||| |||||||||||||||  |||||||| ||||| | |||||||| |||||||||||||| || |||||||||||||||||||| | ||||| ||||    
T  45431882 gagtcaatctttgctccatttgcctttgctccatttaactcatttaccatcatggatgtgtgatacgtgttaaaataatatccaatggtcgaaataaaaa 45431783  T
Q  192 agggaaagataaacaa--ccacatgtgattgcttttagaaacacaat 236  Q
    ||| ||  ||||||||   |||||||||||| | |||||||||||||    
T  45431782 aggcaacaataaacaaacacacatgtgattgttcttagaaacacaat 45431736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 32249345 - 32249455
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||||||||||| |||||||  ||||| |||||||| ||||||| | ||||| |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  32249345 gagtccatctttgttccatttgcctttgttcaatttaccccatttcctttcatagatgtgtgacacttgttaaaagaatatccaatggttgaaattaaaa 32249444  T
Q  192 agggaaagata 202  Q
    ||| |||||||    
T  32249445 aggtaaagata 32249455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 22492572 - 22492486
Alignment:
Q  89 tatgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaa 176  Q
    ||||||| |||||| |||||||||  |||||||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  22492572 tatgagttcatctt-gctccatttgcctttgctccatttatcccatttaccatcatggatgtgtgacacgtgctaaaataatatccaa 22492486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 23752867 - 23752803
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||| |||||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  23752867 gagtgcatctttgcttcttttacctttgctcaatttatcccatttaccatcatggatgtgtgaca 23752803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 32250185 - 32250027
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    |||| ||||||||||||||||| |||||||||||| | | |||||||  |||  |||| ||||||  ||  |||||||||||||| | ||||||| ||||    
T  32250185 gagttcatctttgctccatttacctttgctcaattcacctcatttactatcacagatgcgtgacatgtgacaaaataatatccaacggttgaaataaaaa 32250086  T
Q  192 agggaaagataaacaa--ccacatgtgattgcttttagaaacacaatctctgtatctttt 249  Q
    |   ||  ||||||||   ||||||||| |||||| ||||||||||||||||||||||||    
T  32250085 acacaacaataaacaaacacacatgtga-tgctttcagaaacacaatctctgtatctttt 32250027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 48204146 - 48204211
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||||||||||||||||||||  ||||||| |||||||| ||||||| |||||||||| |||||    
T  48204146 tgagtccatctttgctccatttaagtttgctccatttatcctatttaccatcatggatgtatgaca 48204211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 32492585 - 32492670
Alignment:
Q  118 tgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaagggaaagataa 203  Q
    ||||| ||||| |||||| ||||| ||||||||||||||  ||  |||||||||||||| | ||||| ||||||||| ||| ||||    
T  32492585 tgctccatttaccccattgacctttatggatgtgtgacatgtggcaaaataatatccaacggttgaatttaaaaaggaaaaaataa 32492670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 43844794 - 43844858
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||| ||||||||||||||||  |||||||||||||| ||||||||    |||||||||||||||    
T  43844794 gagtgcatctttgctccatttcactttgctcaatttaccccatttaaagacatggatgtgtgaca 43844858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 35753137 - 35753100
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttat 129  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  35753137 gagtccatctttgctccatttatgtttactcaatttat 35753100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 17626418 - 17626250
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaa 189  Q
    |||||||||| |||||||||||| ||||||| | ||||| |||||||||| ||||||||||||||||| || || |||||||||||| | ||||||| ||    
T  17626418 atgagtccat-tttgctccatttgtctttgcaccatttaccccatttaccatcatggatgtgtgacacgtggtataataatatccaacggttgaaataaa 17626320  T
Q  190 aaagggaaagataaacaa--ccacatgtgattgcttttagaaacacaatctctgtatctttttccagaac 257  Q
    ||||  ||  ||||||||   |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  17626319 aaagacaacaataaacaaacacacatgtgattgcttttagaaacacaatctccatatctttttccagaac 17626250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 17625634 - 17625736
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    ||||||||||||||||||||||   |||| | ||||| |||||||||||||||||||||| ||||| ||| |||| ||||||||||  ||||||||||||    
T  17625634 gagtccatctttgctccatttaggcttgcaccatttaccccatttaccttcatggatgtgcgacacgtgtcaaaagaatatccaatagttgaaattaaaa 17625733  T
Q  192 agg 194  Q
    |||    
T  17625734 agg 17625736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 38443033 - 38443098
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||||||||||||||||||||  | ||||| ||||| |||||||||| ||||||||||||||||    
T  38443033 tgagtccatctttgctccatttaagtctgctccatttaccccatttaccatcatggatgtgtgaca 38443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 42578706 - 42578753
Alignment:
Q  89 tatgagtccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  42578706 tatgagtccatctttgctccatttatgtttgctcaatttaccccattt 42578753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 6462685 - 6462640
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  6462685 tgagtccatctttgctccatttatgtttgctcaatttaccccattt 6462640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 38443668 - 38443620
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccatttacc 139  Q
    |||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  38443668 tgagtccatctttgctccatttaagtttgctccatttaccccatttacc 38443620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 17938174 - 17938219
Alignment:
Q  91 tgagtccatctttgctccatttatctttgctcaatttatcccattt 136  Q
    ||||| ||||||||||||||||  |||||||||||||| |||||||    
T  17938174 tgagtgcatctttgctccatttcactttgctcaatttaccccattt 17938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 92 - 253
Target Start/End: Complemental strand, 129423 - 129260
Alignment:
Q  92 gagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaa 191  Q
    |||||||| |||||||||||| ||||||| | ||||| | |||||| | ||||||||||||||||| || || | |||||||||| | ||||||| ||||    
T  129423 gagtccatatttgctccatttgtctttgcaccatttacctcatttatcatcatggatgtgtgacacgtgatatactaatatccaacggttgaaataaaaa 129324  T
Q  192 agggaaagataaacaa--ccacatgtgattgcttttagaaacacaatctctgtatctttttcca 253  Q
    ||  ||  ||||||||   |||||||||||||||||||||||||||| ||  ||||||||||||    
T  129323 agacaacaataaacaaacacacatgtgattgcttttagaaacacaatttccatatctttttcca 129260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 128663 - 128765
Alignment:
Q  94 gtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgacacatgttaaaataatatccaatgtttgaaattaaaaag 193  Q
    ||||||||||||||||||||   |||| | |||||| |||||||||||||| |||||| ||||| ||| |||| |||||| |||| |||||||| |||||    
T  128663 gtccatctttgctccatttaggcttgcaccatttattccatttaccttcatagatgtgcgacacgtgtcaaaagaatatcgaatggttgaaatttaaaag 128762  T
Q  194 gga 196  Q
    |||    
T  128763 gga 128765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 2639717 - 2639756
Alignment:
Q  97 catctttgctccatttatctttgctcaatttatcccattt 136  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  2639717 catctttgctccatttatttttgctcaatttaccccattt 2639756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 18476 - 18545
Alignment:
Q  87 tttatgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||| |||||||||||| |||||||||  |||| ||||||||  ||||||||| ||||||||||||||||    
T  18476 tttaggagtccatctttactccatttaagtttgttcaatttacaccatttaccatcatggatgtgtgaca 18545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 28548463 - 28548400
Alignment:
Q  93 agtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    ||||||||||| |||||||||  ||||||||||||||| |||||| | | ||||||||||||||    
T  28548463 agtccatctttactccatttacttttgctcaatttatctcatttatcattatggatgtgtgaca 28548400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 34260114 - 34260180
Alignment:
Q  90 atgagtccatctttgctccatttatctttgctcaatttatcccatttaccttcatggatgtgtgaca 156  Q
    |||||||||||||||||||||||  |||| ||||||||| |||||||    ||||||||||||||||    
T  34260114 atgagtccatctttgctccattttcctttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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