View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0903_low_14 (Length: 374)

Name: NF0903_low_14
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0903_low_14
NF0903_low_14
[»] chr5 (1 HSPs)
chr5 (77-374)||(10323499-10323796)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 77 - 374
Target Start/End: Complemental strand, 10323796 - 10323499
Alignment:
Q  77 aatatcgatatataaggataattgagttatagaacttactgcaaaattaaaaacaattatacttgatgctttatggggattatcatgatcacccatagaa 176  Q
    |||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10323796 aatatcgatatataagaataattgaattataggatttactgcaaaattaaaaacaattatacttgatgctttatggggattataatgatcacccatagaa 10323697  T
Q  177 agtgaaacttcaagtttaactaaatccttaaccatttgtggatgtatatcatcattgacccagccatttgaactacatatacaaacaatatttcgaaaat 276  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10323696 agtgaaacttcaagtttaactaaatccttaaccatttgtgcatgtatatcatcattgaccccgccatttgaactacatatacaaacaatatttcgaaaat 10323597  T
Q  277 caacttaggatcttctttgagttagtaaattaatgataatgttaaatatttggagcacctttcaattaaagtaacaaaggacaaactaccaatgtaaa 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10323596 caacttaggatcttctttgagttagtaaattaatgataatgttaaatatttggagcacctttcaattaaagtaacaaaggacaaactaccaatgtaaa 10323499  T

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