View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_16 (Length: 340)
Name: NF0903_low_16
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 30994348 - 30994639
Alignment:
| Q |
22 |
atcccacctcatttccccaacctcatagggtcat--tgcacatcctctgcgaagcagagttgataaaaaggccgattagaatttcaatttttctatgcat |
119 |
Q |
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| T |
30994348 |
atcccacctcatttccccaacctcgtagggtcatattgcacgtcctatgtgaagcatagttgagaaaaaggccgattagaatttcaatttttctatgcat |
30994447 |
T |
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| Q |
120 |
atttattgagttttatgaaatctataatttgtttgttttaaaccactaatttttagcggaagttcttgtaatcatgaatttggtcacgaggtaagtaaat |
219 |
Q |
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| T |
30994448 |
attcattgagttttatgaagtatatattttgtttgttttaaaccactaatttttagcggaagttcttgtaatcatgaatttggtcacgaggtaagtaaat |
30994547 |
T |
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| Q |
220 |
tatgatcctgttacaaccataattcaaacttagtctctcctgaacgatttgtttgtccttaactgaaactcattgatcccttgagctcaatt |
311 |
Q |
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| T |
30994548 |
tatggtcctgttacaaccataattcaaacttagtctctcctgaacgatttgtttgtccttaactgaaactcattgatcccttgagctcaatt |
30994639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 30965536 - 30965669
Alignment:
| Q |
6 |
agcagcacagagagagatcccacctcatttccccaacctcatagggtcattgcacatcctctgcgaagcagagttg--ataaaaaggccgattagaattt |
103 |
Q |
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| T |
30965536 |
agcagcacatagagagatctcacctcatttccccaacctcatagggtcattgcacgtcctctgcgaagcagagttgacaaaaaaaggctgattagaattc |
30965635 |
T |
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| Q |
104 |
caatttttctatgcatattta-ttgagttttatg |
136 |
Q |
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| T |
30965636 |
caatttttctatgtatgtttacttgtgttttatg |
30965669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 30935423 - 30935557
Alignment:
| Q |
6 |
agcagcacagagagagatcccacctcatttccccaacctcatagggtcattgcacatcctctgcgaagcagagttgat----aaaaaggccgattagaat |
101 |
Q |
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||||||||| | |||||||||||| |||| || |||| |||||||||||||||| ||||||| || |||||||||| |||||||| ||||||||| |
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| T |
30935423 |
agcagcacatacagagatcccaccccattgccgcaacttcatagggtcattgcaagtcctctgtgatgcagagttgaaggaaaaaaaggctgattagaat |
30935522 |
T |
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| Q |
102 |
ttcaatttttctatgcatattta-ttgagttttat |
135 |
Q |
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| T |
30935523 |
ttcaatatttctatgtatgtttacttgagttttat |
30935557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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