View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_17 (Length: 339)
Name: NF0903_low_17
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 48107917 - 48107612
Alignment:
| Q |
1 |
ttttgctactattgaggtaataatattgacacatcttttaatatgattattaattcttaaacattatattgcataaactttcttgtgttgtcaatgcctt |
100 |
Q |
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| T |
48107917 |
ttttgctactattgaggtaat------gacacatcttttaatatgattattaattcttaaacatt-----gcataaattttcttgtgttgtcaatgcctt |
48107829 |
T |
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| Q |
101 |
gaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttggacagtat |
200 |
Q |
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| T |
48107828 |
ggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttggacagtat |
48107729 |
T |
|
| Q |
201 |
ttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggt |
300 |
Q |
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| T |
48107728 |
ttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggt |
48107629 |
T |
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| Q |
301 |
tcagctagagaaaggat |
317 |
Q |
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| T |
48107628 |
tcagctagagaaaggat |
48107612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 94 - 294
Target Start/End: Complemental strand, 48064166 - 48063966
Alignment:
| Q |
94 |
atgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttgg |
193 |
Q |
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| T |
48064166 |
atgccttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttgg |
48064067 |
T |
|
| Q |
194 |
acagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcac |
293 |
Q |
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| T |
48064066 |
agagtgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcac |
48063967 |
T |
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| Q |
294 |
a |
294 |
Q |
| |
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| T |
48063966 |
a |
48063966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 48101445 - 48101219
Alignment:
| Q |
68 |
attgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccg |
167 |
Q |
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| T |
48101445 |
attgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccag |
48101346 |
T |
|
| Q |
168 |
gatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaag |
267 |
Q |
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| T |
48101345 |
gatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacag |
48101246 |
T |
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| Q |
268 |
aacacaatcattagatagtttttcaca |
294 |
Q |
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||||||| |||| |||||||||||||| |
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| T |
48101245 |
aacacaaccattggatagtttttcaca |
48101219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 296
Target Start/End: Complemental strand, 48068818 - 48068620
Alignment:
| Q |
98 |
cttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttggacag |
197 |
Q |
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||||||||||| |||||| | ||||||||| ||||||||||||||||| || |||||| ||||| | ||||||||||||||||| ||| |||||| | |
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| T |
48068818 |
cttgaaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacgg |
48068719 |
T |
|
| Q |
198 |
tatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaa |
296 |
Q |
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| T |
48068718 |
tgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaa |
48068620 |
T |
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