View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0903_low_25 (Length: 326)

Name: NF0903_low_25
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0903_low_25
NF0903_low_25
[»] chr2 (14 HSPs)
chr2 (83-149)||(387627-387693)
chr2 (168-221)||(5254631-5254684)
chr2 (168-222)||(14436916-14436970)
chr2 (168-222)||(43816096-43816150)
chr2 (174-222)||(43248882-43248930)
chr2 (168-222)||(3745719-3745773)
chr2 (168-214)||(9823715-9823761)
chr2 (168-222)||(25280964-25281018)
chr2 (169-222)||(15457840-15457893)
chr2 (168-204)||(7461071-7461107)
chr2 (175-222)||(13512495-13512542)
chr2 (168-222)||(10524476-10524529)
chr2 (168-220)||(14405578-14405630)
chr2 (174-222)||(41877207-41877255)
[»] chr8 (14 HSPs)
chr8 (168-222)||(9659480-9659534)
chr8 (168-223)||(22773998-22774053)
chr8 (172-222)||(16457128-16457178)
chr8 (168-222)||(12897925-12897979)
chr8 (168-222)||(31207011-31207065)
chr8 (168-204)||(34866309-34866345)
chr8 (168-222)||(20138804-20138858)
chr8 (168-222)||(32065934-32065988)
chr8 (171-222)||(35815896-35815947)
chr8 (168-222)||(24995044-24995098)
chr8 (172-222)||(37986508-37986558)
chr8 (168-221)||(13538364-13538417)
chr8 (168-221)||(13686057-13686110)
chr8 (169-222)||(35821633-35821685)
[»] chr6 (5 HSPs)
chr6 (168-222)||(3254335-3254389)
chr6 (172-221)||(3117873-3117922)
chr6 (168-222)||(15132489-15132543)
chr6 (168-217)||(15944382-15944431)
chr6 (177-205)||(16598939-16598967)
[»] chr1 (9 HSPs)
chr1 (168-222)||(30685573-30685627)
chr1 (168-221)||(41920836-41920889)
chr1 (168-222)||(7002565-7002619)
chr1 (175-222)||(46814121-46814168)
chr1 (168-222)||(14320701-14320755)
chr1 (168-221)||(6804916-6804969)
chr1 (168-204)||(24659315-24659351)
chr1 (174-218)||(27031496-27031540)
chr1 (168-204)||(40216155-40216191)
[»] chr4 (13 HSPs)
chr4 (168-221)||(7703065-7703118)
chr4 (168-222)||(35329385-35329439)
chr4 (168-222)||(30167212-30167266)
chr4 (168-222)||(27555579-27555634)
chr4 (168-221)||(4306083-4306136)
chr4 (168-204)||(9750162-9750198)
chr4 (168-219)||(8255408-8255459)
chr4 (168-219)||(8268826-8268877)
chr4 (168-219)||(8705789-8705840)
chr4 (168-218)||(2826163-2826213)
chr4 (168-222)||(30964815-30964869)
chr4 (172-222)||(49528464-49528514)
chr4 (169-222)||(11281375-11281428)
[»] chr7 (20 HSPs)
chr7 (168-222)||(3419048-3419102)
chr7 (168-222)||(31971784-31971838)
chr7 (168-222)||(40726140-40726194)
chr7 (168-222)||(5859932-5859986)
chr7 (168-222)||(25161186-25161240)
chr7 (168-222)||(47325534-47325588)
chr7 (168-220)||(33434480-33434532)
chr7 (170-222)||(37795374-37795426)
chr7 (170-222)||(37795702-37795754)
chr7 (168-220)||(48161690-48161742)
chr7 (168-222)||(10244558-10244612)
chr7 (170-220)||(11378772-11378822)
chr7 (168-222)||(34391560-34391614)
chr7 (168-222)||(44353213-44353267)
chr7 (169-222)||(3867493-3867545)
chr7 (168-222)||(6585264-6585318)
chr7 (168-222)||(35745481-35745535)
chr7 (168-222)||(42454383-42454437)
chr7 (182-222)||(3419321-3419361)
chr7 (173-221)||(43482284-43482331)
[»] chr5 (4 HSPs)
chr5 (168-222)||(18593620-18593674)
chr5 (168-221)||(7161663-7161716)
chr5 (168-221)||(698746-698799)
chr5 (168-217)||(7452971-7453020)
[»] chr3 (15 HSPs)
chr3 (168-222)||(2392152-2392206)
chr3 (168-222)||(2393915-2393969)
chr3 (168-222)||(21343725-21343779)
chr3 (168-222)||(47439293-47439347)
chr3 (168-222)||(53248278-53248332)
chr3 (168-222)||(19176884-19176938)
chr3 (168-222)||(34475407-34475461)
chr3 (168-222)||(47236076-47236130)
chr3 (170-222)||(37158684-37158735)
chr3 (168-222)||(4463734-4463788)
chr3 (168-222)||(45164231-45164285)
chr3 (168-218)||(50305223-50305273)
chr3 (168-204)||(25506719-25506755)
chr3 (174-222)||(40023224-40023272)
chr3 (174-222)||(50560022-50560070)
[»] scaffold0068 (1 HSPs)
scaffold0068 (168-221)||(35473-35526)
[»] scaffold0172 (1 HSPs)
scaffold0172 (169-222)||(19296-19349)
[»] scaffold0343 (1 HSPs)
scaffold0343 (174-204)||(6101-6131)
[»] scaffold0085 (1 HSPs)
scaffold0085 (168-222)||(48713-48767)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 387693 - 387627
Alignment:
Q  83 tgagatgaattacatttacatcaacctaataatttgtaccaaactttcttgattttggctattgcat 149  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  387693 tgagatggattacatttacatgaacctaataatttgtaccaaactttcttgattttggctattgcat 387627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 5254684 - 5254631
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  5254684 aatcagcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaa 5254631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 14436916 - 14436970
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| ||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  14436916 aatcagcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaac 14436970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 43816096 - 43816150
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||    
T  43816096 aatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaac 43816150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 43248882 - 43248930
Alignment:
Q  174 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaac 43248930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 3745773 - 3745719
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||| |||||||||  |||||  ||||||||||||||||    
T  3745773 aatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaac 3745719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 9823761 - 9823715
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatg 214  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||||    
T  9823761 aatcggcaaatattattaaacgccatctccgcaagacacaaggtatg 9823715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 25280964 - 25281018
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||| ||||||||||||||||||||||| ||||||  | ||||||||||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaac 25281018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 15457893 - 15457840
Alignment:
Q  169 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||| ||||||||||||||||||||||||  | | ||||||||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaac 15457840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 7461107 - 7461071
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagac 204  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7461107 aatcagcaaatattattaaacgtcatccccgcaagac 7461071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 13512495 - 13512542
Alignment:
Q  175 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||| ||||||||||  || |||||||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaac 13512542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 10524529 - 10524476
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| || ||| |||||||  ||||||||||||||||    
T  10524529 aatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaac 10524476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 14405630 - 14405578
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaa 220  Q
    |||| |||||||||||||||||| || || ||||||| ||||||||| |||||    
T  14405630 aatcagcaaatattattaaacgttattcctgcaagacgtaaggtatgaacgaa 14405578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 41877207 - 41877255
Alignment:
Q  174 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||  ||||||||||||||  ||| ||||||||||||    
T  41877207 caaatattattaaactccatccccgcaagacgcaagatatggacgaaac 41877255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 9659534 - 9659480
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  9659534 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaac 9659480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 22774053 - 22773998
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaact 223  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaact 22773998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 16457128 - 16457178
Alignment:
Q  172 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  16457128 ggcaaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaac 16457178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 12897925 - 12897979
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||||||||||||||||||   ||| ||||||||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaac 12897979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 31207011 - 31207065
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaac 31207065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 34866309 - 34866345
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagac 204  Q
    |||||||||||||||||||||||||||||||||||||    
T  34866309 aatcggcaaatattattaaacgtcatccccgcaagac 34866345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 20138858 - 20138804
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||| ||||||||||||||| ||||||||||||||  || |||||||||||||    
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaac 20138804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 32065934 - 32065988
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| |||| ||||||||   ||||||||||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaac 32065988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 35815896 - 35815947
Alignment:
Q  171 cggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||    
T  35815896 cggcaaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaac 35815947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 24995044 - 24995098
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| |||||||||||| |||| |||||||| |||||  ||||||||||||||||    
T  24995044 aatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaac 24995098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 37986508 - 37986558
Alignment:
Q  172 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||| ||||||||||||||||  |||| | |||||||||    
T  37986508 ggcaaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaac 37986558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 13538417 - 13538364
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||| ||||||||||||||||| |||| || ||||||  |||||||||||||||    
T  13538417 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaa 13538364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 13686057 - 13686110
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||| ||||||||||||||||| |||| || ||||||  |||||||||||||||    
T  13686057 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaa 13686110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 35821685 - 35821633
Alignment:
Q  169 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||| |||| |||||||||  |||| |||||||||||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaac 35821633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 3254389 - 3254335
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaac 3254335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 3117922 - 3117873
Alignment:
Q  172 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  3117922 ggcaaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaa 3117873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 15132489 - 15132543
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| ||||||||||||||||| ||||  |||||||| |||||||||||| ||||    
T  15132489 aatcagcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaac 15132543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 15944431 - 15944382
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggac 217  Q
    |||||||||||||||||||||| |||||| | |||||  |||||||||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggac 15944382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 16598939 - 16598967
Alignment:
Q  177 atattattaaacgtcatccccgcaagaca 205  Q
    |||||||||||||||||||||||||||||    
T  16598939 atattattaaacgtcatccccgcaagaca 16598967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 30685573 - 30685627
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaac 30685627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 41920889 - 41920836
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  41920889 aatcgacaaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaa 41920836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 7002619 - 7002565
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||| ||||| |  |||||||||||||||||    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaac 7002565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 46814121 - 46814168
Alignment:
Q  175 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaac 46814168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 14320755 - 14320701
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||||| |||||   ||||||||||| ||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaac 14320701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 6804969 - 6804916
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||||| |||||||||||||||  |||||||||||||  |||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa 6804916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24659351 - 24659315
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagac 204  Q
    |||| ||||||||||||||||||||||||||||||||    
T  24659351 aatcagcaaatattattaaacgtcatccccgcaagac 24659315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 27031496 - 27031540
Alignment:
Q  174 caaatattattaaacgtcatccccgcaagacataaggtatggacg 218  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||    
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacg 27031540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 40216155 - 40216191
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagac 204  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  40216155 aatcagcaaatattattaaacgtcatcctcgcaagac 40216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 7703118 - 7703065
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa 7703065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 35329439 - 35329385
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||    
T  35329439 aatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaac 35329385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 30167212 - 30167266
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  30167212 aatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaac 30167266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 27555579 - 27555634
Alignment:
Q  168 aatcggcaaatattattaaacgtcat-ccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaac 27555634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 4306136 - 4306083
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||| ||||||    
T  4306136 aatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa 4306083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 9750198 - 9750162
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagac 204  Q
    ||||| |||||||||||||||||||||||||||||||    
T  9750198 aatcgacaaatattattaaacgtcatccccgcaagac 9750162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 8255459 - 8255408
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacga 219  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| |||||||    
T  8255459 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacga 8255408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 8268877 - 8268826
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacga 219  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| |||||||    
T  8268877 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacga 8268826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 8705789 - 8705840
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacga 219  Q
    |||||||||||||||||||||||||||||  ||||||   ||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacga 8705840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 2826213 - 2826163
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacg 218  Q
    |||| |||||||||||||||||||||| | |||||||  ||||||||||||    
T  2826213 aatcagcaaatattattaaacgtcatctctgcaagacgcaaggtatggacg 2826163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 30964869 - 30964815
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||| |||||||||||||||  |||||| |||||||  ||||||||||||||||    
T  30964869 aatcgacaaatattattaaacaccatccctgcaagacgcaaggtatggacgaaac 30964815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 49528514 - 49528464
Alignment:
Q  172 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||| |||||||  || |||||||| ||||||||||||||||||||    
T  49528514 ggcaaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaac 49528464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 11281375 - 11281428
Alignment:
Q  169 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||| ||||||||| || ||||||  ||| ||||||||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaac 11281428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 3419048 - 3419102
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  3419048 aatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaac 3419102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 31971784 - 31971838
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  31971784 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaac 31971838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 40726140 - 40726194
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaac 40726194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 5859932 - 5859986
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||||||||||||  | | ||||||||||||    
T  5859932 aatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaac 5859986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25161240 - 25161186
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaac 25161186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 47325534 - 47325588
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||||| || |||||  ||||||||||||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaac 47325588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 33434480 - 33434532
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaa 220  Q
    |||||||||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaa 33434532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 37795426 - 37795374
Alignment:
Q  170 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaac 37795374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 37795754 - 37795702
Alignment:
Q  170 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaac 37795702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 48161690 - 48161742
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaa 220  Q
    |||| |||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  48161690 aatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacgaa 48161742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 10244612 - 10244558
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||  |||| |||||||||  ||||||||||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaac 10244558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 11378772 - 11378822
Alignment:
Q  170 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaa 220  Q
    |||||||||||||||||||| || |||||||||||  ||||||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacgaa 11378822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 34391614 - 34391560
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| |||||||||||||||||||||||||||| |||  | ||||||||||||||    
T  34391614 aatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaac 34391560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 44353213 - 44353267
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||| ||||||||||||||| ||||||||||||||  || |||||||||||||    
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaac 44353267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 3867545 - 3867493
Alignment:
Q  169 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||||||    
T  3867545 atcggcaaatattattaaacttcat-cccgcaagacgtaaggtattgacgaaac 3867493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 6585318 - 6585264
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| ||||||||||||||||| |||||||||||||   |||| |||||||||||    
T  6585318 aatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaac 6585264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 35745481 - 35745535
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| |||||||||||||||||||||| ||| || ||  ||||||||||||||||    
T  35745481 aatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaac 35745535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 42454383 - 42454437
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| |||||||||||||||| |||||||||||||||  ||| ||| ||||||||    
T  42454383 aatcagcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaac 42454437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 3419321 - 3419361
Alignment:
Q  182 attaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||| ||||||||||||||  ||||||||||||||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaac 3419361  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43482331 - 43482284
Alignment:
Q  173 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    ||||||||||||||||||||||||||  ||||  |||||||||||||||    
T  43482331 gcaaatattattaaacgtcatccccg-tagacgcaaggtatggacgaaa 43482284  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 18593674 - 18593620
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  18593674 aatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaac 18593620  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 7161663 - 7161716
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| |||||||||||    
T  7161663 aatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaa 7161716  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 698799 - 698746
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    |||| ||||||||||||||||| |||| | ||||||| ||||||||||| ||||    
T  698799 aatcagcaaatattattaaacgacatctctgcaagacgtaaggtatggatgaaa 698746  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 7453020 - 7452971
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggac 217  Q
    ||||||||||||||||||||| ||||||  |||||||  |||||||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggac 7452971  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 2392152 - 2392206
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaac 2392206  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 2393915 - 2393969
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaac 2393969  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 21343779 - 21343725
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  21343779 aatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaac 21343725  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 47439347 - 47439293
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  47439347 aatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaac 47439293  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 53248332 - 53248278
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  53248332 aatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaac 53248278  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 19176938 - 19176884
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||||||| || |||||||  || |||||||||||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaac 19176884  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34475407 - 34475461
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||| ||||||||||||||||||||||||||||  | |||||| |||||||    
T  34475407 aatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaac 34475461  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 47236130 - 47236076
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| ||||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  47236130 aatcagcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaac 47236076  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 37158735 - 37158684
Alignment:
Q  170 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaac 37158684  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 4463734 - 4463788
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||||||| |||| ||||||  |||  |||||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaac 4463788  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 45164285 - 45164231
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||| | ||||||||||||   ||||||||||| ||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaac 45164231  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 50305223 - 50305273
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacg 218  Q
    |||| ||||||||||||||||| ||| ||||||||||  ||||||||||||    
T  50305223 aatcagcaaatattattaaacgccattcccgcaagacgcaaggtatggacg 50305273  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 25506719 - 25506755
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagac 204  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  25506719 aatcgacaaatattattaaacatcatccccgcaagac 25506755  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 40023224 - 40023272
Alignment:
Q  174 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||| |||||||||||||||  |  |||||||||||||    
T  40023224 caaatattattaaacatcatccccgcaagacgcattgtatggacgaaac 40023272  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 50560070 - 50560022
Alignment:
Q  174 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||||||||||||||||||||| ||||| ||  ||| ||||||||||||    
T  50560070 caaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaac 50560022  T

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Target: scaffold0068 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 35473 - 35526
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 221  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  35473 aatcggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacgaaa 35526  T

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Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 19349 - 19296
Alignment:
Q  169 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    ||||||||||||||||||||||||||| ||||||||  | ||||||||||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaac 19296  T

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Target: scaffold0343 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 6131 - 6101
Alignment:
Q  174 caaatattattaaacgtcatccccgcaagac 204  Q
    |||||||||||||||||||||||||||||||    
T  6131 caaatattattaaacgtcatccccgcaagac 6101  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 48767 - 48713
Alignment:
Q  168 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaac 222  Q
    |||| |||||||||||| |||||| ||||||||||||| ||| ||||||| ||||    
T  48767 aatccgcaaatattattcaacgtcctccccgcaagacacaagatatggactaaac 48713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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