View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_27 (Length: 318)
Name: NF0903_low_27
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 26086991 - 26087216
Alignment:
| Q |
7 |
ttagtggcgtcaaaaataagtattcaaagaatacttttatccatatagagtttcatgcgatgccaaagatgttcaacaatcaaattgttttgagtaaata |
106 |
Q |
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| T |
26086991 |
ttagtggcgtcaaaaataagtattcaaagaatacttttatccatatagagtttcatgcgataccaaagatgttcaacaatcaaattgttttgagtaaata |
26087090 |
T |
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| Q |
107 |
aagtgagttgtttaaacatgtactttggtttgtgcagtgtaagtgctgaaacaagaataagaagatcgtattctcgagataaaacatcgttaactattca |
206 |
Q |
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| T |
26087091 |
aagtgagttgtttaaacatgtattttggtttgtgcagtgtaagtgctgaaacaagaataagaagatcatattctcgagataaaacatcattaactaatca |
26087190 |
T |
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| Q |
207 |
taccattccttagttggttatatact |
232 |
Q |
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| T |
26087191 |
taccattccttagttggttatatact |
26087216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 26046802 - 26046960
Alignment:
| Q |
7 |
ttagtggcgtcaaaaataagtattcaaagaatacttttatccatatagagtttcatgcgatgccaaagatgttcaacaatcaaattgttttgagtaaata |
106 |
Q |
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| T |
26046802 |
ttagtggcataaaaaataagtattcatataaaatttgtatccatagagact--cgtgcgatactaaagctattcaacaatcaaattggtttgattatata |
26046899 |
T |
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| Q |
107 |
aagtgagttgtttaaacatgtactttggtttgtgcagtgtaagtgctgaaacaagaataag |
167 |
Q |
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| T |
26046900 |
aagtgagttgtttaaacatgtattttggtttgtgcaatgtaagtgctaaaaccaaaataag |
26046960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 26051983 - 26052141
Alignment:
| Q |
7 |
ttagtggcgtcaaaaataagtattcaaagaatacttttatccatatagagtttcatgcgatgccaaagatgttcaacaatcaaattgttttgagtaaata |
106 |
Q |
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| T |
26051983 |
ttagtggcataaaaaataagtattcatataaaatttgtatccatagagact--cgtgcgatactaaagctattcaacaatcaaattggtttgattatata |
26052080 |
T |
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| Q |
107 |
aagtgagttgtttaaacatgtactttggtttgtgcagtgtaagtgctgaaacaagaataag |
167 |
Q |
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| T |
26052081 |
aagtgagttgtttaaacatgtattttggtttgtgcaatgtaagtgctaaaaccaaaataag |
26052141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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