View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_29 (Length: 301)
Name: NF0903_low_29
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 15292154 - 15291977
Alignment:
| Q |
52 |
attatactttcctaggaacttttaagaacttagtgatccttggacttcacatgagaagtcttgatgatgactgcaagcaagaaccatttctcagatcaag |
151 |
Q |
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| T |
15292154 |
attatactttcctaggaacttttaagaacttagtgatccttggacttcacatgagaagtcttgatgatgactgcaagcaagaaccatttctctgatcaag |
15292055 |
T |
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| Q |
152 |
taacaatcatcttctatgtatttagtcattttaataaatattcaattagaagagagatgcaaatctgattgatatcat |
229 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15292054 |
taacaatcatcttctacgtatttagtcattttaataaatattcaattagaagagagatacaaatctgattgatatcat |
15291977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 15472523 - 15472346
Alignment:
| Q |
52 |
attatactttcctaggaacttttaagaacttagtgatccttggacttcacatgagaagtcttgatgatgactgcaagcaagaaccatttctcagatcaag |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15472523 |
attatactttcctaggaacttttaagaacttagtgatccttggacttcacatgagaagtcttgatgatgactgcaagcaagaaccatttctctgatcaag |
15472424 |
T |
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| Q |
152 |
taacaatcatcttctatgtatttagtcattttaataaatattcaattagaagagagatgcaaatctgattgatatcat |
229 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15472423 |
taacaatcatcttctacgtatttagtcattttaataaatattcaattagaagagagatacaaatctgattgatatcat |
15472346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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