View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_39 (Length: 252)
Name: NF0903_low_39
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 42208058 - 42208201
Alignment:
| Q |
1 |
gaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208058 |
gaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataac |
42208157 |
T |
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| Q |
101 |
ttaaaacctaattaggcctctaattattatacatgatctgcctc |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208158 |
ttaaaacctaattaggcctctaattattatacatgatctgcctc |
42208201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 42214864 - 42215007
Alignment:
| Q |
1 |
gaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214864 |
gaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataac |
42214963 |
T |
|
| Q |
101 |
ttaaaacctaattaggcctctaattattatacatgatctgcctc |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214964 |
ttaaaacctaattaggcctctaattattatacatgatctgcctc |
42215007 |
T |
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