View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0903_low_4 (Length: 487)
Name: NF0903_low_4
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Original strand, 19282076 - 19282524
Alignment:
| Q |
13 |
aaaatccacagcgattcgcgaatgttcaccgtgtcttcggtgcaagcaacgtcgctaagctcttaaaagagcttgacgtgaaggaccgtgaagacgcggt |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19282076 |
aaaatccacagcgattcgctaatgttcaccgtgtcttcggtgcaagcaacgtcgctaagctcttaaaagagcttgacgtgaaggaccgtgaagacgcggt |
19282175 |
T |
|
| Q |
113 |
gaaatctttggcatacgaggcagagtctcgtataaaagaccctgtctatggatgtgtaggtctcatctcatatctccaacagaagttaagagaaactcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19282176 |
gaaatctttggcatacgaggcagagtctcgtataaaagaccctgtctatggatgtgtaggtctcatctcatatctccaacagaagttaagagaaactcaa |
19282275 |
T |
|
| Q |
213 |
aatgaactcaccgttgcgaaaaaagaactcgccggttataatttgaatcctcaaaccatgcagtgcttgttgatgaattctggaacagttttaatgcctc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19282276 |
aatgaactcaccgttgcgaaaaaagaactcgccggttataatttgaatcctcaaaccatgcagtgcttattgatgaattctggaacagttttaatgcctc |
19282375 |
T |
|
| Q |
313 |
aa------cagcagcaacaacaacaatggaattcgcagtttgcggcttttgcgaattaccctaacaattttcctcaagagatggttggaggaggtggact |
406 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19282376 |
aacagcagcagcagcaacagcaacaatggaattcgcagtttgcggcttttgcgaattaccctaacaattttcctcaagagatggttggaggaggtggact |
19282475 |
T |
|
| Q |
407 |
agttatgcagcagcagcaacaagaacatgagcttcagatgggtggtggatat |
458 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19282476 |
agttat---gcagcagcaacaagaacatgagcttcagatgggtggtggatat |
19282524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University