View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_44 (Length: 230)
Name: NF0903_low_44
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_44 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 33750572 - 33750438
Alignment:
| Q |
96 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750572 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcag |
33750473 |
T |
|
| Q |
196 |
cagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33750472 |
cagcccatttaccccatggtctttgtctcactcct |
33750438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 33719099 - 33718965
Alignment:
| Q |
96 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcag |
195 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
33719099 |
aactcgatggcggcattgtcataagctctggcagcttcctccgccgtggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcag |
33719000 |
T |
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| Q |
196 |
cagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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|||||||||| ||||||||||| |||||||||||| |
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| T |
33718999 |
cagcccattttccccatggtctctgtctcactcct |
33718965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 33721118 - 33720984
Alignment:
| Q |
96 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcag |
195 |
Q |
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|||||||| || |||||||| |||||||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
33721118 |
aactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcag |
33721019 |
T |
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| Q |
196 |
cagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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|||||||||| ||||||||||| || ||||||||| |
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| T |
33721018 |
cagcccattttccccatggtctctgcctcactcct |
33720984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 33735772 - 33735638
Alignment:
| Q |
96 |
aactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcag |
195 |
Q |
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||||| || ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||| ||||||||||| |||| |
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| T |
33735772 |
aactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcag |
33735673 |
T |
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| Q |
196 |
cagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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|||||||||| |||||||| || || ||||||||| |
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| T |
33735672 |
cagcccattttccccatggcctctgcctcactcct |
33735638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 6583102 - 6583052
Alignment:
| Q |
180 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcct |
6583052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 6568943 - 6568893
Alignment:
| Q |
180 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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|||||||| |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcct |
6568893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 13409921 - 13409880
Alignment:
| Q |
189 |
atttcagcagcccatttaccccatggtctttgtctcactcct |
230 |
Q |
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||||| || |||||||| |||||||||||||||||||||||| |
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| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcct |
13409880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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