View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_47 (Length: 216)
Name: NF0903_low_47
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_47 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 56393698 - 56393822
Alignment:
| Q |
1 |
agcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagattt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56393698 |
agcgaatgaagagggatctggtttctttggtcatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagattt |
56393797 |
T |
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| Q |
101 |
ctggtcttttggtgtagcctttgtt |
125 |
Q |
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| T |
56393798 |
ctggtctattggtgtagcctttgtt |
56393822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 27517936 - 27518060
Alignment:
| Q |
1 |
agcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagattt |
100 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27517936 |
agcgaatgaagagggatctagtttctttggtcatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatactcctcagattt |
27518035 |
T |
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| Q |
101 |
ctggtcttttggtgtagcctttgtt |
125 |
Q |
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| T |
27518036 |
ttagtcttttggtgtagcctttgtt |
27518060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 8192134 - 8192193
Alignment:
| Q |
38 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
97 |
Q |
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| T |
8192134 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
8192193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 40457655 - 40457777
Alignment:
| Q |
3 |
cgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagatttct |
102 |
Q |
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||||| ||||| |||||| | |||||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| |||||| |
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| T |
40457655 |
cgaataaagagtgatctgatgtctttggtcatagagtcaagaagccatgacttaaccaaacagttttcatcctcccatgtttcatactcctcgaatttct |
40457754 |
T |
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| Q |
103 |
ggtcttttggtgtagcctttgtt |
125 |
Q |
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| T |
40457755 |
catcttttggtgcagcctttgtt |
40457777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 40088635 - 40088576
Alignment:
| Q |
38 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
97 |
Q |
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|||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |
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| T |
40088635 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
40088576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 495939 - 495880
Alignment:
| Q |
38 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
97 |
Q |
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| T |
495939 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
495880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 4242195 - 4242136
Alignment:
| Q |
38 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
97 |
Q |
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|||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |
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| T |
4242195 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
4242136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 8017057 - 8016998
Alignment:
| Q |
38 |
atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga |
97 |
Q |
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|||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||| |
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| T |
8017057 |
atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga |
8016998 |
T |
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