View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_5 (Length: 416)
Name: NF0903_low_5
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 37704474 - 37704859
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704474 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
37704573 |
T |
|
| Q |
101 |
gtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704574 |
gtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttc |
37704673 |
T |
|
| Q |
201 |
aagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704674 |
aagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtattta |
37704773 |
T |
|
| Q |
301 |
gaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcgg |
386 |
Q |
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| T |
37704774 |
gaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcgg |
37704859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 37699008 - 37699349
Alignment:
| Q |
14 |
attgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatag |
113 |
Q |
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| T |
37699008 |
attgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatag |
37699107 |
T |
|
| Q |
114 |
aaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---a |
209 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||| | |
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| T |
37699108 |
aaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataa |
37699207 |
T |
|
| Q |
210 |
taagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaa |
303 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| | |
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| T |
37699208 |
taagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagca |
37699307 |
T |
|
| Q |
304 |
tcggagacttagacttcttcaaatgtacatactttaaagagc |
345 |
Q |
| |
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||||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
37699308 |
acggagacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 37437540 - 37437823
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattca |
100 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |||||||||||||||||||| |
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| T |
37437540 |
agattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaattggcaacaatattaattca |
37437638 |
T |
|
| Q |
101 |
gtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttattt |
199 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||||| |||||||||||||||| |
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| T |
37437639 |
ataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattg |
37437734 |
T |
|
| Q |
200 |
caagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa |
285 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37437735 |
caagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa |
37437823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 37698732 - 37698864
Alignment:
| Q |
102 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
196 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
|
| Q |
197 |
tttcaagttgtgataagataacaaattcattta |
229 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
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| T |
37698832 |
ttgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37698656 - 37698697
Alignment:
| Q |
1 |
agattgtttgcaaattgagtctacgtattcccttattttgtt |
42 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
37698656 |
agattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 345
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
109 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
207 |
Q |
| |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
208 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
291 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
292 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
345 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
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|
| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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